1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
GCTTGAGCATCCAGACTGGACCATGGGTCAATCTTGCACTGATTCATACACCAAGACTTTGAAGAAATTTCATGGATGGCTTGCCAGTTCTAGTTTTACGgtaggatatttcactctataatgatccatacaagtggtggaattccatccacataaagccttgtttggatatcttcatatctatctcaatccatattgtg...
species | Zea mays |
transcript | GRMZM2G125556_T01 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: CCAAGACTTTGAAGAAATTTCATGGATGGCTTGCCAGTTCTAGTTTTACG GTGGCAATGAAGCTTGCTCCTAATAGAGAGAAATTTATGGAGGTCATTAGTEST: gi|93282355|gb|EB674619.1|EB674619
genomic: CCAAGACTTTGAAGAAATTTCATGGATGGCTTGCCAGTTCTAGTTTTACGgtaggatatt ... gtgatcgcagGTGGCAATGAAGCTTGCTCCTAATAGAGAGAAATTTATGGAGGTCATTAGT
EST: CCAAGACTTTGAAGAAATTTCATGGATGGCTTGCCAGTTTTAGTTTTACG GTGGCAATGAAGCTTGCTCTTAATAGAGAGAAATTTATGGAGGTCATTAGTEST: gi|211377924|gb|FL095474.1|FL095474
genomic: CCAAGACTTTGAAGAAATTTCATGGATGGCTTGCCAGTTCTAGTTTTACGgtaggatatt ... gtgatcgcagGTGGCAATGAAGCTTGCTCCTAATAGAGAGAAATTTATGGAGGTCATTAGT
EST: CCAAGACTTTGAAGAAATTTCATGGCTGGCTTGCCAGTTCTAGTTTTACG GTGGCAATGAAGCTTGCTCCTAATAGAGAGAAATTTATGGAGGTCATTAGTEST: gi|211041272|gb|FL124819.1|FL124819
genomic: CCAAGACTTTGAAGAAATTTCATGGATGGCTTGCCAGTTCTAGTTTTACGgtaggatatt ... gtgatcgcagGTGGCAATGAAGCTTGCTCCTAATAGAGAGAAATTTATGGAGGTCATTAGT
EST: CCAAGACTTTGAAGAAATTTCATGGATGGCTTGCCAGTTCTAGTTTTACG GTGGCAATGAAGCTTGCTCCCTA-TAGAGAGAAATTTATGGAEST: gi|211475759|gb|FL124816.1|FL124816
genomic: CCAAGACTTTGAAGAAATTTCATGGATGGCTTGCCAGTTCTAGTTTTACGgtaggatatt ... gtgatcgcagGTGGCAATGAAGCTTGCTCC-TAATAGAGAGAAATTTATGGA
EST: CCAAGACTTTGAAGAAATTTCATGGATGGCTTGCCAGTTCTAGTTTTACG GTGGCAATGAAGCTTGCTCCTAATAGAGAGAAATTTATGGAGGTCATTAGTEST: gi|211464236|gb|FL298400.1|FL298400
genomic: CCAAGACTTTGAAGAAATTTCATGGATGGCTTGCCAGTTCTAGTTTTACGgtaggatatt ... gtgatcgcagGTGGCAATGAAGCTTGCTCCTAATAGAGAGAAATTTATGGAGGTCATTAGT
EST: CCAAGACTTTGAAGAAATTTCATGGATGGCTTGCCAGTTCTAGTTTTACG GTGGCAATGAAGCTTGCTCCTAATAGAGAGAAATTTATGGAGGTCATTEST: gi|71771167|gb|DR969104.1|DR969104
genomic: CCAAGACTTTGAAGAAATTTCATGGATGGCTTGCCAGTTCTAGTTTTACGgtaggatatt ... gtgatcgcagGTGGCAATGAAGCTTGCTCCTAATAGAGAGAAATTTATGGAGGTCATT
EST: CCAAGACTTTGAAGAAATTTCATGGATGGCTTGCCAGTTCTAGTTTTACG GTGGCAATGAAGCTTGCTCCTAATAGAGAGAAATTTATGGAGGTCATTAGTEST: gi|211466762|gb|FL298407.1|FL298407
genomic: CCAAGACTTTGAAGAAATTTCATGGATGGCTTGCCAGTTCTAGTTTTACGgtaggatatt ... gtgatcgcagGTGGCAATGAAGCTTGCTCCTAATAGAGAGAAATTTATGGAGGTCATTAGT
EST: CCAAGACTTTGAAGAAATTTCATGGATGGCTTGCCAGTTCTAGTTTTACG GTGGCAATGAAGCTTGCTCCTAATAGAGAGAAATTTATGGAGGTCATTAGTEST: gi|211464239|gb|FL298403.1|FL298403
genomic: CCAAGACTTTGAAGAAATTTCATGGATGGCTTGCCAGTTCTAGTTTTACGgtaggatatt ... gtgatcgcagGTGGCAATGAAGCTTGCTCCTAATAGAGAGAAATTTATGGAGGTCATTAGT
EST: CCAAGACTTTGAAGAAATTTCATGGATGGCTTGCCAGTTCTAGTTTTACG GTGGCAATGAAGCTTGCTCCTAATAGAGAGAAATTTATGGAGGTCATTAGTEST: gi|211249240|gb|FL481701.1|FL481701
genomic: CCAAGACTTTGAAGAAATTTCATGGATGGCTTGCCAGTTCTAGTTTTACGgtaggatatt ... gtgatcgcagGTGGCAATGAAGCTTGCTCCTAATAGAGAGAAATTTATGGAGGTCATTAGT
EST: CCAAGACTTTGAAGAAATTTCATGGCTGGCTTGCCAGTTCTAGTTTTACG GTGGCAATGAAGCTTGCTCCTAATAGAGAGAAATTTATGGAGGTCATTAGTEST: gi|60400894|gb|DN233701.1|DN233701
genomic: CCAAGACTTTGAAGAAATTTCATGGATGGCTTGCCAGTTCTAGTTTTACGgtaggatatt ... gtgatcgcagGTGGCAATGAAGCTTGCTCCTAATAGAGAGAAATTTATGGAGGTCATTAGT
EST: CCAAGACTTTGAAGAAATTTCATGGATGGCTTGCCAGTTCTAGTTTTACG GTGGCAATGAAGCTTGCTCCTAATAGAGAGAAATTTATGGAGGTCATTAGTEST: gi|76283007|gb|DV022575.1|DV022575
genomic: CCAAGACTTTGAAGAAATTTCATGGATGGCTTGCCAGTTCTAGTTTTACGgtaggatatt ... gtgatcgcagGTGGCAATGAAGCTTGCTCCTAATAGAGAGAAATTTATGGAGGTCATTAGT
EST: CCAAGACTTTGAAGAAATTTCATGGATGGCTTGCCAGTTCTAGTTTTACG GTGGCAATGAAGCTTGCTCCTAATAGAGAGAAATTTATGGAGGTCATTAGTEST: gi|211466767|gb|FL298412.1|FL298412
genomic: CCAAGACTTTGAAGAAATTTCATGGATGGCTTGCCAGTTCTAGTTTTACGgtaggatatt ... gtgatcgcagGTGGCAATGAAGCTTGCTCCTAATAGAGAGAAATTTATGGAGGTCATTAGT
EST: CCAAGACTTTGAAGAAATTTCATGGATGGCTTGCCAGTTCTAGTTTTACG GTGCCAATGAAGCTTGCTCCTA-TAGAGAAAAATT-ATGGAGGGCATTAEST: gi|211041276|gb|FL124823.1|FL124823
genomic: CCAAGACTTTGAAGAAATTTCATGGATGGCTTGCCAGTTCTAGTTTTACGgtaggatatt ... gtgatcgcagGTGGCAATGAAGCTTGCTCCTAATAGAGAGAAATTTATGGAGGTCATTA
EST: CCAAGACTTTGAAGAAATTTCATGGATGGCTTGCCAGTTCTAGTTTTACG GTGGCAATGAAGCTTGCTCCTAATAGAGAGAAATTTATGGAGGTCATTAGTEST: gi|211484414|gb|FL480094.1|FL480094
genomic: CCAAGACTTTGAAGAAATTTCATGGATGGCTTGCCAGTTCTAGTTTTACGgtaggatatt ... gtgatcgcagGTGGCAATGAAGCTTGCTCCTAATAGAGAGAAATTTATGGAGGTCATTAGT
EST: CCAAGACTTTGAAGAAATTTCATGGCTGGCTTGCCAGTTCTAGTTTTACG GTGGCAATGAAGCTTGCTCCTAATAGAGAGAAATTTATGGAGGTCATTAGTEST: gi|211475757|gb|FL124814.1|FL124814
genomic: CCAAGACTTTGAAGAAATTTCATGGATGGCTTGCCAGTTCTAGTTTTACGgtaggatatt ... gtgatcgcagGTGGCAATGAAGCTTGCTCCTAATAGAGAGAAATTTATGGAGGTCATTAGT
EST: CCAAGACTTTGAAGAAATTTCATGGCTGGCTTGCCAGTTCTAGTTTTACG GTGGCAATGAAGCTTGCTCCTAATAGAGAGAAATTTATGGAGGTCATTAGTEST: gi|71421128|gb|DR805308.1|DR805308
genomic: CCAAGACTTTGAAGAAATTTCATGGATGGCTTGCCAGTTCTAGTTTTACGgtaggatatt ... gtgatcgcagGTGGCAATGAAGCTTGCTCCTAATAGAGAGAAATTTATGGAGGTCATTAGT
EST: CCAAGACTTTGAAGAAATTTCATGGATGGCTTGCCAGTTCTAGTTTTACG GTGGCAATGAAGCTTGCTCCTAATAGAGAGAAATTTATGGAGGTCATTAGTEST: gi|211041270|gb|FL124817.1|FL124817
genomic: CCAAGACTTTGAAGAAATTTCATGGATGGCTTGCCAGTTCTAGTTTTACGgtaggatatt ... gtgatcgcagGTGGCAATGAAGCTTGCTCCTAATAGAGAGAAATTTATGGAGGTCATTAGT
EST: CCAAGACTTTGAAGAAATTTCATGGCTGGCTTGCCAGTTCTAGTTTTACG GTGGCAATGAAGCTTGCTCCTAATAGAGAGAAATTTATGGAGGTCATTAGTEST: gi|93282356|gb|EB674620.1|EB674620
genomic: CCAAGACTTTGAAGAAATTTCATGGATGGCTTGCCAGTTCTAGTTTTACGgtaggatatt ... gtgatcgcagGTGGCAATGAAGCTTGCTCCTAATAGAGAGAAATTTATGGAGGTCATTAGT
EST: CCAAGACTTTGAAGAAATTTCATGGATGGCTTGCCAGTTCTAGTTTTACG GTGGCAATGAAGCTTGCTCCTAATAGAGAGAAATTTATGGAGGTCATTAGTEST: gi|211466760|gb|FL298405.1|FL298405
genomic: CCAAGACTTTGAAGAAATTTCATGGATGGCTTGCCAGTTCTAGTTTTACGgtaggatatt ... gtgatcgcagGTGGCAATGAAGCTTGCTCCTAATAGAGAGAAATTTATGGAGGTCATTAGT
EST: CAAGACTTTGAAGAAATTTCATGGATGGCTTGCCAGTTCTAGTTTTACG GTGGCAATGAAGCTTGCTCCTAATAGAGAGAAATTTATGGAGGTCATTAGT
genomic: CAAGACTTTGAAGAAATTTCATGGATGGCTTGCCAGTTCTAGTTTTACGgtaggatatt ... gtgatcgcagGTGGCAATGAAGCTTGCTCCTAATAGAGAGAAATTTATGGAGGTCATTAGT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCTTGAGCATCCAGACTGGACCATGGGTCAATCTTGCACTGATTCATACACCAAGACTTTGAAGAAATTTCATGGATGGCTTGCCAGTTCTAGTTTTACGgtaggatatttcactctataatgatccatacaagtggtggaattccatccacataaagccttgtttggatatcttcatatctatctcaatccatattgtg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA