1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
GGTGTTCCATATCCATCATTGCCCAAGAAAGAAAAACCAAGGCGTGTGGAGTTGTACTTCTCAAGTTGGCGTATTAGAGCTGgtaaacccttttctcagtagctagtatcattttggtgtcttgagctgtgtttgtcctgaacatgaaaggtttccagtcaggcacgagcagaaatgcttagaccttaacgctacaatcatattctttgtttgtgaaatgcag
species | Zea mays |
transcript | GRMZM2G124965_T01 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: TGGAGTTGTACTTCTCAAGTTGGCGTATTAGAGCTG TTCAATCGCCTAAACATGTGGGTCAGCAATCTGCGTGCGAAGTAACTTTGGEST: gi|149083325|gb|EE172618.2|EE172618
genomic: TGGAGTTGTACTTCTCAAGTTGGCGTATTAGAGCTGgtaaaccctt ... tgaaatgcagTTCAATCGCCTAAACATGTGGGTCAGCAATCTGCGTGCGAAGTAACTTTGG
EST: CAAGTTGGCGTATTAGAGCTG TTCAATCGCCTAAACATGTGGGTCAGCAATCTGCGTGCGAAGTAACTTTGGEST: gi|211387106|gb|FL377395.1|FL377395
genomic: CAAGTTGGCGTATTAGAGCTGgtaaaccctt ... tgaaatgcagTTCAATCGCCTAAACATGTGGGTCAGCAATCTGCGTGCGAAGTAACTTTGG
EST: AAAACCAAGGCGTGTGGAGTTGTACTTCTCAAGTTGGCGTATTAGAGCTG TTCAATCGCCTAAACATGTGGGTCAGCAATCTGCGTGCGAAGTAACTTTGGEST: gi|211156664|gb|FL403854.1|FL403854
genomic: AAAACCAAGGCGTGTGGAGTTGTACTTCTCAAGTTGGCGTATTAGAGCTGgtaaaccctt ... tgaaatgcagTTCAATCGCCTAAACATGTGGGTCAGCAATCTGCGTGCGAAGTAACTTTGG
EST: AAAACCAAGGCGTGTGGAGTTGTACTTCTCAAGTTGGCGTATTAGAGCTG TTCAATCGCCTAAACATGTGGGTCAGCAATCTGCGTGCGAAGTAACTTTGGEST: gi|211217740|gb|FL411413.1|FL411413
genomic: AAAACCAAGGCGTGTGGAGTTGTACTTCTCAAGTTGGCGTATTAGAGCTGgtaaaccctt ... tgaaatgcagTTCAATCGCCTAAACATGTGGGTCAGCAATCTGCGTGCGAAGTAACTTTGG
EST: AAAACCAAGGCGTGTGGAGTTGTACYTCTCAAGTTGGCGTATTAGAGCTG TTCAATCGCCTAAACATGTGGGTCAGCAATCTGCGTGCGAAGTAACTTTGGEST: gi|76015843|gb|DT943013.1|DT943013
genomic: AAAACCAAGGCGTGTGGAGTTGTACTTCTCAAGTTGGCGTATTAGAGCTGgtaaaccctt ... tgaaatgcagTTCAATCGCCTAAACATGTGGGTCAGCAATCTGCGTGCGAAGTAACTTTGG
EST: GTACTTCTCAAGTTGGCGTATTAGAGCTG TTCAATCGCCTAAACATGTGGGTCAGCAATCTGCGTGCGAAGTAACTTTGG
genomic: GTACTTCTCAAGTTGGCGTATTAGAGCTGgtaaaccctt ... tgaaatgcagTTCAATCGCCTAAACATGTGGGTCAGCAATCTGCGTGCGAAGTAACTTTGG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGTGTTCCATATCCATCATTGCCCAAGAAAGAAAAACCAAGGCGTGTGGAGTTGTACTTCTCAAGTTGGCGTATTAGAGCTGgtaaacccttttctcagtagctagtatcattttggtgtcttgagctgtgtttgtcctgaacatgaaaggtttccagtcaggcacgagcagaaatgcttagaccttaacgctacaatcatattctttgtttgtgaaatgcag
- - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT