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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAAAGGCTCAGACATCCACGGAGAGGTTTGAGATGTGGGGCGATGGTCTCCAGACCAGGTCCTTCACCTTCATCGACGAGTGCGTGGAGGGTGTTCTGAGgtatgtctgtgtgctttggatatactaccaaatttaagcaagagctagctgttgcctgtgttgtgtatagcaatggagaatcgacattgtatgacgatgatgcccacactgtgtgcactgcag

Basic information

species Zea mays
transcript GRMZM2G124434_T01
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G124434_T01 (Zea mays), 5'ss of exon 5
lower sequence: LOC_Os10g28200.1 (Oryza sativa), 5'ss of exon 5
GAAAGGCTCAGACATCCACGGAGAGGTTTGAGATGTGGGGCGATGGTCTCCAGACCAGGTCCTTCACCTTCATCGACGAGTGCGTGGAGGGTGTTCTGAGgtatgtctgtgtgctttggatatactaccaaatttaagcaagagctagctgttgcctgtgttgtgtatagcaatggagaatcgacattgtatgacgatgatgcccacactgtgtgcactgcag
| ||||||||||| ||||| || ||||||||||||||||| ||||| ||||||||| |||||||||| ||||| || ||||| || |||||||||||||||||||    |     |   || || || | |  |  | ||    |||       ||||  ||   |       |||       | ||  ||  |  |  ||  | |                 
GGAAGGCTCAGACTTCCACTGACAGGTTTGAGATGTGGGGTGATGGCCTCCAGACCCGGTCCTTCACATTCATAGATGAGTGTGTTGAGGGTGTTCTGAGgtatgcagctacttgtcacat-tattatctagatagaaca----ctaaaccacacctg-attagatgagaagctggt---ctaatatgatacaa--acaatttctag----------------

upper sequence: GRMZM2G124434_T01 (Zea mays), 5'ss of exon 5
lower sequence: GLYMA19G43400.1 (Glycine max), 5'ss of exon 5
GAAAGGCTCAGACATCCACGGAGAGGTTTGAGATGTGGGGCGATGGTCTCCAGACCAGGTCCTTCACCTTCATCGACGAGTGCGTGGAGGGTGTTCTGAGgtatgtct-gtgtgctttggatatactaccaaatttaagcaagagctagctgttgcctgtgttgtgtatagcaatggagaatcgacattgtatgacgatgatgcccacactgtgtgcactgcag
| ||| | |  || ||||  ||  | |||||||||||||| |||||  | || || || |||||||||||||| || ||||| || || ||||| |||||||||  || | |   ||||    || |  | |  |||      |  ||     |   | |   | || |  || |  | |||  | ||| ||||   ||| ||                     
GCAAGACACTTACTTCCAAAGATCGATTTGAGATGTGGGGAGATGGATTGCAAACAAGATCCTTCACCTTCATTGATGAGTGTGTTGAAGGTGTACTGAGgtattccttgcggattttgtggctaatgacta--ttacatctaaattaatgact-tatttacagggtttctcattttaaaatttaaattatatggatatg-tgt--------------------

upper sequence: GRMZM2G124434_T01 (Zea mays), 5'ss of exon 5
lower sequence: GLYMA19G43410.1 (Glycine max), 5'ss of exon 5
GAAAGGCTCAGACATCCACGGAGAGGTTTGAGATGTGGGGCGATGGTCTCCAGACCAGGTCCTTCACCTTCATCGACGAGTGCGTGGAGGGTGTTCTGAGgtatgtct-gtgtgctttggatatactaccaaatttaagcaagagctagctgttgcctgtgttgtgtatagcaatggagaatcgacattgtatgacgatgatgcccacactgtgtgcactgcag
| ||| | |  || ||||  ||  | |||||||||||||| |||||  | || || || |||||||||||||| || ||||| || || ||||| |||||||||  || | |   ||||    || |  | |  |||      |  ||     |   | ||  | || |  || |  | |||  | ||| |       || |                      
GCAAGACACTTACTTCCAAAGATCGATTTGAGATGTGGGGAGATGGATTGCAAACAAGATCCTTCACCTTCATTGATGAGTGTGTTGAAGGTGTACTGAGgtattccttgcggattttgtggctaatgacta--ttacatctaaattaatgacttattttgagg-gtttctcattttaaaatttaaattatggatatgtgttt---------------------

upper sequence: GRMZM2G124434_T01 (Zea mays), 5'ss of exon 5
lower sequence: GLYMA03G40720.1 (Glycine max), 5'ss of exon 5
GAAAGGCTCAGACATCCACGGAGAGGTTTGAGATGTGGGGCGATGGTCTCCAGACCAGGTCCTTCACCTTCATCGACGAGTGCGTGGAGGGTGTTCTGAGgtatgtct-gtgtgctttggatatactaccaaat-ttaagcaagagctagctgttgcctgtgttgtgtatagcaatggagaatcgacattgtatgacgatgatgcccacactgtgtgcactgcag
| ||| | |  || ||||  ||  | |||||||||||||| |||||  | || || || |||||||||||||| || ||||| || || ||||| |||||||||  || |     ||||    || |  | | | |||      |  ||     |   | |   |  | |  || |  | |||  | ||| |       ||                        
GCAAGACACTTACTTCCAAAGACCGATTTGAGATGTGGGGAGATGGATTGCAAACAAGATCCTTCACCTTCATTGATGAGTGTGTTGAAGGTGTACTGAGgtattccttgcagattttgtggctaatgactattattacatctaaattaatgact-tatttccaggatttctcattttaaaatttaaattatggatatgtg------------------------

upper sequence: GRMZM2G124434_T01 (Zea mays), 5'ss of exon 5
lower sequence: AT5G28840.1 (Arabidopsis thaliana), 5'ss of exon 5
GAAAGGCTCAGACATCCACGGAGAGGTTTGAGATGTGGGGCGATGGTCTCCAGACCAGGTCCTTCACCTTCATCGACGAGTGCGTGGAGGGTGTTCTGAGgtatgtctgtgtgctttggat-atactaccaaatttaagcaagagctagctgttgcctgtgttgtgtatagcaatggagaatcgacattgtatgacgatgatgcccacactgtgtgcactgcag
| ||||||||||| ||||| || ||||||||||||||||| ||||| || |||||| | || || ||||| ||||| ||||| || || ||||| || ||||  |  | | | ||   | | ||        || | ||    |  | |||| |   |  ||  | | | |   |  ||                                             
GGAAGGCTCAGACTTCCACTGATAGGTTTGAGATGTGGGGAGATGGGCTTCAGACCCGTTCTTTTACCTTTATCGATGAGTGTGTTGAAGGTGTACTCAGgtgagggtatctcctgatgttgatgaagttgtatgttagacgtaattggctgatattttcgtcat-ttttgttttatag---------------------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|74242203|gb|DT650117.1|DT650117
EST:     CAGACCAGGTCCTTCACCTTCATCGACGAGTGCGTGGAGGGTGTTCTGAG                         ATTGACCAAGTCAGACTTCCGCGAGCCAGTGAACATCGGAAGCGATGAGAT
genomic: CAGACCAGGTCCTTCACCTTCATCGACGAGTGCGTGGAGGGTGTTCTGAGgtatgtctgt ... tgcactgcagATTGACCAAGTCAGACTTCCGCGAGCCAGTGAACATCGGAAGCGATGAGAT
EST: gi|67022927|gb|CO451676.1|CO451676
EST:     CAGACCAGGTCCTTCACCTTCATCGACGAGTGCGTGGAGGGTGTTCTGAG                         ATTGACCAAGTCAGACTTCCGCGAGCCAGTGAACATCGGAAGCGATGAGAT
genomic: CAGACCAGGTCCTTCACCTTCATCGACGAGTGCGTGGAGGGTGTTCTGAGgtatgtctgt ... tgcactgcagATTGACCAAGTCAGACTTCCGCGAGCCAGTGAACATCGGAAGCGATGAGAT
EST: gi|149074868|gb|EE163308.2|EE163308
EST:     CAGACCAGGTCCTTCACCTTCATCGACGAGTGCGTGGAGGGTGTTCTGAG                         ATTGACCAAGTCAGACTTCCGCGAGCCAGTGAACATCGGAAGCGATGAGAT
genomic: CAGACCAGGTCCTTCACCTTCATCGACGAGTGCGTGGAGGGTGTTCTGAGgtatgtctgt ... tgcactgcagATTGACCAAGTCAGACTTCCGCGAGCCAGTGAACATCGGAAGCGATGAGAT
EST: gi|148943578|gb|EC888641.2|EC888641
EST:     CAGACCAGGTCCTTCACCTTCATCGACGAGTGCGTGGAGGGTGTTCTGAG                         ATTGACCAAGTCAGACTTCCGCGAGCCAGTGAACATCGGAAGCGATGAGAT
genomic: CAGACCAGGTCCTTCACCTTCATCGACGAGTGCGTGGAGGGTGTTCTGAGgtatgtctgt ... tgcactgcagATTGACCAAGTCAGACTTCCGCGAGCCAGTGAACATCGGAAGCGATGAGAT
EST: gi|83278935|gb|DV942943.1|DV942943
EST:     CAGACCAGGTCCTTCACCTTCATCGACGAGTGCGTGGAGGGTGTTCTGAG                         ATTGACCAAGTCAGACTTCCGCGAGCCAGTGAACATCGGAAGCGATGAGAT
genomic: CAGACCAGGTCCTTCACCTTCATCGACGAGTGCGTGGAGGGTGTTCTGAGgtatgtctgt ... tgcactgcagATTGACCAAGTCAGACTTCCGCGAGCCAGTGAACATCGGAAGCGATGAGAT
EST: gi|111189030|gb|EE287166.1|EE287166
EST:     CAGACCAGGTCCTTCACCTTCATCGACGAGTGCGTGGAGGGTGTTCTGAG                         ATTGACCAAGTCAGACTTCCGCGAGCCAGTGAACATCGGAAGCGATGAGAT
genomic: CAGACCAGGTCCTTCACCTTCATCGACGAGTGCGTGGAGGGTGTTCTGAGgtatgtctgt ... tgcactgcagATTGACCAAGTCAGACTTCCGCGAGCCAGTGAACATCGGAAGCGATGAGAT
EST: gi|4152128|gb|AI372262.1|AI372262
EST:     CAGACCAGGTCCTTCACCTTCATCGACGAGTGCGTGGAGGGTGTTCTGAG                         ATTGACCAAGTCAGACTTCCGCGAGCCAGTGAACATCGGAAGCGATGAGAT
genomic: CAGACCAGGTCCTTCACCTTCATCGACGAGTGCGTGGAGGGTGTTCTGAGgtatgtctgt ... tgcactgcagATTGACCAAGTCAGACTTCCGCGAGCCAGTGAACATCGGAAGCGATGAGAT
EST: gi|30031705|gb|CB833556.1|CB833556
EST:     CAGACCAGGTCCTTCACCTTCATCGACGAGTGCGTGGAGGGTGTTCTGAG                         ATTGACCAAGTCAGACTTCCGCGAGCCAGTGAACATCGGAAGCGATGAGAT
genomic: CAGACCAGGTCCTTCACCTTCATCGACGAGTGCGTGGAGGGTGTTCTGAGgtatgtctgt ... tgcactgcagATTGACCAAGTCAGACTTCCGCGAGCCAGTGAACATCGGAAGCGATGAGAT
EST: gi|67016994|gb|CO445743.1|CO445743
EST:     CAGACCAGGTCCTTCACCTTCATCGACGAGTGCGTGGAGGGTGTTCTGAG                         ATTGACCAAGTCAGACTTCCGCGAGCCAGTGAACATCGGAAGCGATGAGAT
genomic: CAGACCAGGTCCTTCACCTTCATCGACGAGTGCGTGGAGGGTGTTCTGAGgtatgtctgt ... tgcactgcagATTGACCAAGTCAGACTTCCGCGAGCCAGTGAACATCGGAAGCGATGAGAT
EST: gi|67023443|gb|CO452192.1|CO452192
EST:     CAGACCAGGTCCTTCACCTTCATCGACGAGTGCGTGGAGGGTGTTCTGAG                         ATTGACCAAGTCAGACTTCCGCGAGCCAGTGAACATCGGAAGCGATGAGAT
genomic: CAGACCAGGTCCTTCACCTTCATCGACGAGTGCGTGGAGGGTGTTCTGAGgtatgtctgt ... tgcactgcagATTGACCAAGTCAGACTTCCGCGAGCCAGTGAACATCGGAAGCGATGAGAT
EST: gi|78110080|gb|DV528495.1|DV528495
EST:     CAGACCAGGTCCTTCACCTTCATCGACGAGTGCGTGGAGGGTGTTCTGAG                         ATTGACCAAGTCAGACTTCCGCGAGCCAGTGAACATCGGAAGCGATGAGAT
genomic: CAGACCAGGTCCTTCACCTTCATCGACGAGTGCGTGGAGGGTGTTCTGAGgtatgtctgt ... tgcactgcagATTGACCAAGTCAGACTTCCGCGAGCCAGTGAACATCGGAAGCGATGAGAT
EST: gi|71432080|gb|DR813130.1|DR813130
EST:     CAGACCAGGTCCTTCACCTTCATCGACGAGTGCGTGGAGGGTGTTCTGAG                         ATTGACCAAGTCAGACTTCCGCGAGCCAGTGAACATCGGAAGCGATGAGAT
genomic: CAGACCAGGTCCTTCACCTTCATCGACGAGTGCGTGGAGGGTGTTCTGAGgtatgtctgt ... tgcactgcagATTGACCAAGTCAGACTTCCGCGAGCCAGTGAACATCGGAAGCGATGAGAT
EST: gi|148948428|gb|EC893945.2|EC893945
EST:     CAGACCAGGTCCTTCACCTTCATCGACGAGTGCGTGGAGGGTGTTCTGAG                         ATTGACCAAGTCAGACTTCCGCGAGCCAGTGAACATCGGAAGCGATGAGAT
genomic: CAGACCAGGTCCTTCACCTTCATCGACGAGTGCGTGGAGGGTGTTCTGAGgtatgtctgt ... tgcactgcagATTGACCAAGTCAGACTTCCGCGAGCCAGTGAACATCGGAAGCGATGAGAT
EST: gi|31362361|gb|CD446718.1|CD446718
EST:     CAGACCAGGTCCTTCACCTTCATCGACGAGTGCGTGGAGGGTGTTCTGAG                         ATTGACCAAGTCAGACTTCCGCGAGCCAGTGAACATCGGAAGCGATGAGAT
genomic: CAGACCAGGTCCTTCACCTTCATCGACGAGTGCGTGGAGGGTGTTCTGAGgtatgtctgt ... tgcactgcagATTGACCAAGTCAGACTTCCGCGAGCCAGTGAACATCGGAAGCGATGAGAT
EST: gi|18162499|gb|BM332338.1|BM332338
EST:     CAGACCAGGTCCTTCACCTTCATCGACGAGTGCGTGGAGGGTGTTCTGAG                         ATTGACCAAGTCAGACTTCCGCGAGCCAGTGAACATCGGAAGCGATGAGAT
genomic: CAGACCAGGTCCTTCACCTTCATCGACGAGTGCGTGGAGGGTGTTCTGAGgtatgtctgt ... tgcactgcagATTGACCAAGTCAGACTTCCGCGAGCCAGTGAACATCGGAAGCGATGAGAT
EST: gi|83278893|gb|DV942901.1|DV942901
EST:     CAGACCAGGTCTTTCACTTTCATAGACGAGTGCGTGGAGGGTGTTCTGAG                         ATTGACCAAGTCAGACTTCCGCGAGCCAGTGAACATCGGAAGCGATGAGAT
genomic: CAGACCAGGTCCTTCACCTTCATCGACGAGTGCGTGGAGGGTGTTCTGAGgtatgtctgt ... tgcactgcagATTGACCAAGTCAGACTTCCGCGAGCCAGTGAACATCGGAAGCGATGAGAT
EST: gi|86470451|gb|DY236821.1|DY236821
EST:     ACGAGTGCGTGGAGGGTGTTCTGAG                         ATTGACCAAGTCAGACTTCCGCGAGCCAGTGAACATCGGAAGCGATGAGAT
genomic: ACGAGTGCGTGGAGGGTGTTCTGAGgtatgtctgt ... tgcactgcagATTGACCAAGTCAGACTTCCGCGAGCCAGTGAACATCGGAAGCGATGAGAT
EST: gi|67025719|gb|CO454468.1|CO454468
EST:     CAGACCAGGTCCTTCACCTTCATCGACGAGTGCGTGGAGGGTGTTCTGAG                         ATTGACCAAGTCAGACTTCCGCGAGCCAGTGAACATCGGAAGCGATGAGAT
genomic: CAGACCAGGTCCTTCACCTTCATCGACGAGTGCGTGGAGGGTGTTCTGAGgtatgtctgt ... tgcactgcagATTGACCAAGTCAGACTTCCGCGAGCCAGTGAACATCGGAAGCGATGAGAT
EST: gi|67021931|gb|CO450680.1|CO450680
EST:     CAGACCAGGTCCTTCACCTTCATCGACGAGTGCGTGGAGGGTGTTCTGAG                         ATTGACCAAGTCAGACTTCCGCGAGCCAGTGAACATCGGAAGCGATGAGAT
genomic: CAGACCAGGTCCTTCACCTTCATCGACGAGTGCGTGGAGGGTGTTCTGAGgtatgtctgt ... tgcactgcagATTGACCAAGTCAGACTTCCGCGAGCCAGTGAACATCGGAAGCGATGAGAT
EST: gi|71766426|gb|DR964363.1|DR964363
EST:     CAGACCAGGTCCTTCACCTTCATCGACGAGTGCGTGGAGGGTGTTCTGAG                         ATTGACCTAGTCAGACTTCCGCCGAGC-AGTGAAC
genomic: CAGACCAGGTCCTTCACCTTCATCGACGAGTGCGTGGAGGGTGTTCTGAGgtatgtctgt ... tgcactgcagATTGACCAAGTCAGACTTCCGC-GAGCCAGTGAAC
EST: gi|71766425|gb|DR964362.1|DR964362
EST:     CAGACCAGTTCCTTCACCTTCATCGAGGAGTGCGGGGAGGGTGTTCTGAG                         ATTGACCAAGTCAGACTTCCGCGAGCCAGTGAACATCGGAAGCGATGAGAT
genomic: CAGACCAGGTCCTTCACCTTCATCGACGAGTGCGTGGAGGGTGTTCTGAGgtatgtctgt ... tgcactgcagATTGACCAAGTCAGACTTCCGCGAGCCAGTGAACATCGGAAGCGATGAGAT
EST: gi|78075013|gb|DV503447.1|DV503447
EST:     CAGACCAGGTCCTTCACCTTCATCGACGAGTGCGTGGAGGGTGTTCTGAG                         ATTGACCAAGTCAGACTTCCGCGAGCCAGTGAACATCGGAAGCGATGAGAT
genomic: CAGACCAGGTCCTTCACCTTCATCGACGAGTGCGTGGAGGGTGTTCTGAGgtatgtctgt ... tgcactgcagATTGACCAAGTCAGACTTCCGCGAGCCAGTGAACATCGGAAGCGATGAGAT
EST: gi|3157363|gb|AA979985.1|AA979985
EST:     CAGACCAGGTCCTTCACCTTCATCGACGAGTGCGTGGAGGGTGTTCTGAG                         ATTGACCAAGTCAGACTTCCGCGAGCCAGTGAACATCGGAAGCGATGAGAT
genomic: CAGACCAGGTCCTTCACCTTCATCGACGAGTGCGTGGAGGGTGTTCTGAGgtatgtctgt ... tgcactgcagATTGACCAAGTCAGACTTCCGCGAGCCAGTGAACATCGGAAGCGATGAGAT
EST: gi|76014791|gb|DT941961.1|DT941961
EST:     CAGACCAGGTCCTTCACCTTCATCGACGAGTGCGTGGAGGGTGTTCTGAG                         ATTGACCAAGTCAGACTTCCGCGAGCCAGTGAACATCGGAAGCGATGAGAT
genomic: CAGACCAGGTCCTTCACCTTCATCGACGAGTGCGTGGAGGGTGTTCTGAGgtatgtctgt ... tgcactgcagATTGACCAAGTCAGACTTCCGCGAGCCAGTGAACATCGGAAGCGATGAGAT
EST: gi|31361616|gb|CD445973.1|CD445973
EST:     CAGAACAGGTCCTTCACCTTCATCGACGAGTGCGTGGAGGGTGTTCTGAG                         ATTGAC-AAGTCAGACTTCCGCGAGCCAGTGAACATCGGAAGCGAT
genomic: CAGACCAGGTCCTTCACCTTCATCGACGAGTGCGTGGAGGGTGTTCTGAGgtatgtctgt ... tgcactgcagATTGACCAAGTCAGACTTCCGCGAGCCAGTGAACATCGGAAGCGAT
EST: gi|74242204|gb|DT650118.1|DT650118
EST:     CAGACCAGGTCCTTCACCTTCATCGACGAGTGCGTGGAGGGTGTTCTGAG                         ATTGACCAAGTCAGACTTCCGCGAGCCAGTGAACATCGGAAGCGATGAGAT
genomic: CAGACCAGGTCCTTCACCTTCATCGACGAGTGCGTGGAGGGTGTTCTGAGgtatgtctgt ... tgcactgcagATTGACCAAGTCAGACTTCCGCGAGCCAGTGAACATCGGAAGCGATGAGAT
EST: gi|31405869|gb|CD484601.1|CD484601
EST:     CATCGACGAGTGCGTGGAGGGTGTTCTGAG                         ATTGACCAAGTCAGACTTCCGCGAGCCAGTGAACATCGGAAGCGATGAGAT
genomic: CATCGACGAGTGCGTGGAGGGTGTTCTGAGgtatgtctgt ... tgcactgcagATTGACCAAGTCAGACTTCCGCGAGCCAGTGAACATCGGAAGCGATGAGAT
EST: gi|31354646|gb|CD439003.1|CD439003
EST:     CAGACCAGGTCCTTCACCTTCATCGACGAGTGCGTGGAGGGTGTTCTGAG                         ATTGACCAAGTCAGACTTCCGCGAGCCAGTGAACATCGGAAGCGATGAGAT
genomic: CAGACCAGGTCCTTCACCTTCATCGACGAGTGCGTGGAGGGTGTTCTGAGgtatgtctgt ... tgcactgcagATTGACCAAGTCAGACTTCCGCGAGCCAGTGAACATCGGAAGCGATGAGAT
EST: gi|67014813|gb|CO443562.1|CO443562
EST:     CAGACCAGGTCCTTCACCTTCATCGACGAGTGCGTGGAGGGTGTTCTGAG                         ATTGACCAAGTCAGACTTCCGCGAGCCAGTGAACATCGGAAGCGATGAGAT
genomic: CAGACCAGGTCCTTCACCTTCATCGACGAGTGCGTGGAGGGTGTTCTGAGgtatgtctgt ... tgcactgcagATTGACCAAGTCAGACTTCCGCGAGCCAGTGAACATCGGAAGCGATGAGAT

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 48 (upstream exon), 49 (downstream exon)
Score: 201

GAAAGGCTCAGACATCCACGGAGAGGTTTGAGATGTGGGGCGATGGTCTCCAGACCAGGTCCTTCACCTTCATCGACGAGTGCGTGGAGGGTGTTCTGAGgtatgtctgt ... tgcactgcagATTGACCAAGTCAGACTTCCGCGAGCCAGTGAACATCGGAAGCGATGAGATGGTGAGCATGAACGAGATGGCTGAGATCGTGCTGGGCTTTGAGGATAGG


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 490

GAAAGGCTCAGACATCCACGGAGAGGTTTGAGATGTGGGGCGATGGTCTCCAGACCAGGTCCTTCACCTTCATCGACGAGTGCGTGGAGGGTGTTCTGAGgtatgtctgt ... tgcactgcagATTGACCAAGTCAGACTTCCGCGAGCCAGTGAACATCGGAAGCGATGAGATGGTGAGCATGAACGAGATGGCTGAGATCGTGCTGGGCTTTGAGGATAGG


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 356

GAAAGGCTCAGACATCCACGGAGAGGTTTGAGATGTGGGGCGATGGTCTCCAGACCAGGTCCTTCACCTTCATCGACGAGTGCGTGGAGGGTGTTCTGAGgtatgtctgt ... tgcactgcagATTGACCAAGTCAGACTTCCGCGAGCCAGTGAACATCGGAAGCGATGAGATGGTGAGCATGAACGAGATGGCTGAGATCGTGCTGGGCTTTGAGGATAGG


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 368

GAAAGGCTCAGACATCCACGGAGAGGTTTGAGATGTGGGGCGATGGTCTCCAGACCAGGTCCTTCACCTTCATCGACGAGTGCGTGGAGGGTGTTCTGAGgtatgtctgt ... tgcactgcagATTGACCAAGTCAGACTTCCGCGAGCCAGTGAACATCGGAAGCGATGAGATGGTGAGCATGAACGAGATGGCTGAGATCGTGCTGGGCTTTGAGGATAGG


Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GAAAGGCTCAGACATCCACGGAGAGGTTTGAGATGTGGGGCGATGGTCTCCAGACCAGGTCCTTCACCTTCATCGACGAGTGCGTGGAGGGTGTTCTGAGgtatgtctgtgtgctttggatatactaccaaatttaagcaagagctagctgttgcctgtgttgtgtatagcaatggagaatcgacattgtatgacgatgatgcccacactgtgtgcactgcag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG