1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
TATTGCTGATGAAGTCCAGAGTGGTTTTGGCCGTACTGGCAGTCATTACTGGGGATTCCAGACACAAGGTGTCATTCCTGACATAGTCACCATGGCAAAGgtctatctcctactctaaaatgcaagcatgtactaatcaaccctgggggaaatgtcttctgtttttttttgtggcaacatctttccatactgatgtgacaatttgttccccctggtttcag
species | Zea mays |
transcript | GRMZM2G124353_T01 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: GGGGATTCCAGACACAAGGTGTCATTCCTGACATAGTCACCATGGCAAAG GGAATTGGCAATGGCCTACCATTGGGGGCAGTTGTGACAACTCCTGAGATTEST: gi|32942110|gb|CF046929.1|CF046929
genomic: GGGGATTCCAGACACAAGGTGTCATTCCTGACATAGTCACCATGGCAAAGgtctatctcc ... ctggtttcagGGAATTGGCAATGGCCTACCATTGGGGGCAGTTGTGACAACTCCTGAGATT
EST: GGGGATTCCAGACACAAGGTGTCATTCCTGACATAGTCACCATGGCAAAG GGAATTGGCAATGGCCTACCATTGGGGGCAGTTGTGACAACTCCTGAGATTEST: gi|30031577|gb|CB833428.1|CB833428
genomic: GGGGATTCCAGACACAAGGTGTCATTCCTGACATAGTCACCATGGCAAAGgtctatctcc ... ctggtttcagGGAATTGGCAATGGCCTACCATTGGGGGCAGTTGTGACAACTCCTGAGATT
EST: GGGGATTCCAGACACAAGGTGTCATTCCTGACATAGTCACCATGGCAAAG GGAATTGGCAATGGCCTACCATTGGGGGCAGTTGTGACAACTCCTGAGATTEST: gi|32943504|gb|CF048323.1|CF048323
genomic: GGGGATTCCAGACACAAGGTGTCATTCCTGACATAGTCACCATGGCAAAGgtctatctcc ... ctggtttcagGGAATTGGCAATGGCCTACCATTGGGGGCAGTTGTGACAACTCCTGAGATT
EST: GGGGATTCCAGACACAAGGTGTCATTCCTGACATAGTCACCATGGCAAAG GGAATTGGCAATGGCCTACCATTGGGGGCAGTTGTGACAACTCCTGAGATTEST: gi|60338215|gb|DN205188.1|DN205188
genomic: GGGGATTCCAGACACAAGGTGTCATTCCTGACATAGTCACCATGGCAAAGgtctatctcc ... ctggtttcagGGAATTGGCAATGGCCTACCATTGGGGGCAGTTGTGACAACTCCTGAGATT
EST: GGGGATT-CAGACACAAGGTGTCATTCCTGACATAGTCACCATGGCAAAG GGAATTGGCAATGGCCTACCATTGGGGGCAGTTGTGACAACTCCTGAGATTEST: gi|44682053|gb|CK787101.1|CK787101
genomic: GGGGATTCCAGACACAAGGTGTCATTCCTGACATAGTCACCATGGCAAAGgtctatctcc ... ctggtttcagGGAATTGGCAATGGCCTACCATTGGGGGCAGTTGTGACAACTCCTGAGATT
EST: GGGGATTCCAGACACAAGGTGTCATTCCTGACATAGTCACCATGGCAAAG GGAATTGGCAATGGCCTACCATTGGGGGCAGTTGTGACAACTCCTGAGATTEST: gi|94472312|gb|EB701270.1|EB701270
genomic: GGGGATTCCAGACACAAGGTGTCATTCCTGACATAGTCACCATGGCAAAGgtctatctcc ... ctggtttcagGGAATTGGCAATGGCCTACCATTGGGGGCAGTTGTGACAACTCCTGAGATT
EST: GGGGATTCCAGACACAAGGTGTCATTCCTGACATAGTCACCATGGCAAAG GGAATTGGCAATGGCCTACCATTGGGGGCAGTTGTGACEST: gi|13558145|gb|BG549501.1|BG549501
genomic: GGGGATTCCAGACACAAGGTGTCATTCCTGACATAGTCACCATGGCAAAGgtctatctcc ... ctggtttcagGGAATTGGCAATGGCCTACCATTGGGGGCAGTTGTGAC
EST: GGGGATTCCAGACACAAGGTGTCATTCCTGACATAGTCACCATGGCAAAG GGAATTGGCAATGGCEST: gi|113701983|gb|EE679487.1|EE679487
genomic: GGGGATTCCAGACACAAGGTGTCATTCCTGACATAGTCACCATGGCAAAGgtctatctcc ... ctggtttcagGGAATTGGCAATGGC
EST: GGGATTCCAGACACAAGGTGTCATTCTTGACATAGTCACCATGGCAAAG GGAATTGGCAATGGCTTACCATTGGGGGCAGTTGTGACAACTCCTGAGATT
genomic: GGGATTCCAGACACAAGGTGTCATTCCTGACATAGTCACCATGGCAAAGgtctatctcc ... ctggtttcagGGAATTGGCAATGGCCTACCATTGGGGGCAGTTGTGACAACTCCTGAGATT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TATTGCTGATGAAGTCCAGAGTGGTTTTGGCCGTACTGGCAGTCATTACTGGGGATTCCAGACACAAGGTGTCATTCCTGACATAGTCACCATGGCAAAGgtctatctcctactctaaaatgcaagcatgtactaatcaaccctgggggaaatgtcttctgtttttttttgtggcaacatctttccatactgatgtgacaatttgttccccctggtttcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG