Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AACTGCTTCTACTGAACAGAAGAATATGATTTTTCCTGAGATCCTTCCCCAGGCACGTACTTTGATGACTGATGTTTTTGGAAACTATGTTATACAGAAGgtgagaaaccctcatttacattagaacaaatctggtttgttttttaatgatttgcgtattcattttataattgagagcttatgggagctcagtttttaaattagtgattgcttgggttttggcag

Basic information

species Zea mays
transcript GRMZM2G123537_T01
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G123537_T02 (Zea mays), 5'ss of exon 4
lower sequence: LOC_Os02g57390.1 (Oryza sativa), 5'ss of exon 5
AACTGCTTCTACTGAACAGAAGAATATGATTTTTCCTGAGATCCTTCCCCAGGCACGTACTTTGATGACTGATGTTTTTGGAAACTATGTTATACAGAAGgtgagaaaccct-------catttacattagaacaaatctggtttgttttttaatgatttgcgtattcattttataattgagagcttatgggagctcagtttttaaattagtgattgcttgggttttggcag
||| |||||| ||||| ||||| | |  |||||||| ||||| ||||| || ||||| ||| ||||||||||||||||||||||||||||||||||||| ||||| | ||||       |||    ||| | | |||  || | | ||||||| |||| ||   |   || |||| ||| |  | || |      | | || |    || |                     
AACGGCTTCTGCTGAAGAGAAGGACACCATTTTTCCAGAGATTCTTCCTCAAGCACGAACTCTGATGACTGATGTTTTTGGAAACTATGTTATACAGAAAgtgagcagccctactattccatcagtattcggaaaaaaatgatgt-ttttttagtgatatgtaaaa--atgttatcatttactggttctctctaattacttgt--gcttggcag------------------

upper sequence: GRMZM2G123537_T02 (Zea mays), 5'ss of exon 4
lower sequence: GLYMA10G35290.1 (Glycine max), 5'ss of exon 7
AACTGCTTCTACTGAACAGAAGAATATGATTTTTCCTGAGATCCTTCCCCAGGCACGTACTTTGATGACTGATGTTTTTGGAAACTATGTTATACAGAAGgtgagaaaccctcatttacattagaacaaatctggtttgttttttaatgatttgcgtattcattttataattgagagcttatgggagctcagtttttaaattagtgattgcttgggttttggcag
||| || |||   ||| ||||||  | ||| |||||||||||| |||| || || ||| | || ||||||||||||||||| || ||||||||||| || ||    ||    | | ||||   ||| |   |||  |  |     ||  |||  | | || ||||  |  ||||    ||   | |  |||   || | ||      ||||              
AACGGCATCTGTAGAAGAGAAGACCAAGATATTTCCTGAGATCATTCCTCATGCTCGTGCCTTAATGACTGATGTTTTTGGCAATTATGTTATACAAAAAgta--taattagcttatacaactgaata---ctgagtactgacacaaatattctcttttttatttggttgttga----tttaagaatttcatgcttgacatgctctgttgcag------------

upper sequence: GRMZM2G123537_T02 (Zea mays), 5'ss of exon 4
lower sequence: GLYMA20G32230.1 (Glycine max), 5'ss of exon 7
AACTGCTTCTACTGAACAGAAGAATATGATTTTTCCTGAGATCCTTCCCCAGGCACGTACTTTGATGACTGATGTTTTTGGAAACTATGTTATACAGAAGgtgagaaaccctcatttacattagaacaaatctggtttgttttttaatgatttgcgtattcattttataattgagagcttatgggagctcagtttttaaattagtgattgcttgggttttggcag
||| || ||    ||| ||||||  | ||| |||||||||||| |||| || || ||| | ||||||||||||||||||||||| ||||||||||| || ||    ||    | | ||||   ||| |   |||  |  | |  |||  ||   | | || |||   | |||||    ||   | |  |||   || | ||     |||||              
AACAGCATCAGTAGAAGAGAAGACCAAGATATTTCCTGAGATCATTCCTCATGCTCGTGCCTTGATGACTGATGTTTTTGGAAATTATGTTATACAAAAAgta--taattagcttgtacaactgaata---ctgagtactgtcataaatatgctcttttttattgggttattga----tttaagaaattcatgcttgacatgctctattgcag------------

upper sequence: GRMZM2G123537_T02 (Zea mays), 5'ss of exon 4
lower sequence: Vv13s0019g04640.t01 (Vitis vinifera), 5'ss of exon 5
AACTGCTTCTACTGAACAGAAGAATATGATTTTTCCTGAGATCCTTCCCCAGGCACGTACTTTGATGACTGATGTTTTTGGAAACTATGTTATACAGAAGgtgagaaaccctcatttacattagaacaaatctggtttgttttttaatgatttgcgtattcattttataattgagagcttatgggagctcagtttttaaattagtgattgcttgggttttggcag
||||||  |    ||  | |||| || ||| || ||||||||  |||| ||  | | |||||||||||||||||| ||||| || ||||| |||||||| ||     |    ||   |  |||      |     ||| |   ||    |||      |  ||| | | | |   |  ||  |                                          
AACTGCCACAGTGGATGAAAAGATTAAGATATTCCCTGAGATTATTCCTCATTCTCATACTTTGATGACTGATGTCTTTGGGAATTATGTCATACAGAAAgt-----atatccaagaaacttaatgagtacgctatttatacattctgaattgttacttaaattgttttacttgcattttcag------------------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|60348910|gb|DN215883.1|DN215883
EST:     AGGCACGTACTTTGATGACTGATGTTTTTGGAAACTATGTTATACAGAAG                         TTCTTTGAATACGGAACTGAAACGCAAACGAAGCAACTGGCAACCCTGCTT
genomic: AGGCACGTACTTTGATGACTGATGTTTTTGGAAACTATGTTATACAGAAGgtgagaaacc ... gttttggcagTTCTTTGAATACGGAACTGAAACGCAAACGAAGCAACTGGCAACCCTGCTT
EST: gi|18659516|gb|BM500379.1|BM500379
EST:     CTGATGTTTTTGGAAACTATGTTATACAGAAG                         TTCTTTGAATACGGAACTGAAACGCAAACGAAGCAACTGGCAACCCTGCTT
genomic: CTGATGTTTTTGGAAACTATGTTATACAGAAGgtgagaaacc ... gttttggcagTTCTTTGAATACGGAACTGAAACGCAAACGAAGCAACTGGCAACCCTGCTT
EST: gi|32831881|gb|CD971559.1|CD971559
EST:     TACTTTGATGACTGATGTTTTTGGAAACTATGTTATACAGAAG                         TTCTTTGAATACGGAACTGAAACGCAAACGAAGCAACTGGCATCCTTGCTT
genomic: TACTTTGATGACTGATGTTTTTGGAAACTATGTTATACAGAAGgtgagaaacc ... gttttggcagTTCTTTGAATACGGAACTGAAACGCAAACGAAGCAACTGGCAACCCTGCTT