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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GATTCAGAGTTACTAGAACAGATAGACCGAGATGTAAAGCGAACACATCCTGATATTTCATTTTTCTCATCAAAGTCTAACCAGgtttgtattcagtgtttacagtgttcgtactgataccaattgtaccaatatgacttgattattctctgaccctatcag

Basic information

species Zea mays
transcript GRMZM2G122935_T02
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G122935_T01 (Zea mays), 5'ss of exon 5
lower sequence: LOC_Os11g28990.1 (Oryza sativa), 5'ss of exon 5
GATTCAGAGTTACTAGAACAGATAGACCGAGATGTAAAGCGAACACATCCTGATATTTCATTTTTCTCATCAAAGTCTAACCAGgtttgtattcagtgtttacagtgttcgtactgataccaattgtaccaata----tgacttg-atta---ttctctgac-cctatcag
|| |||||  | || ||||||||||| |||||||| ||  ||||||||||||| ||  | ||||||||  | ||| ||||||||||||   |||||||  |      | | || |   |   |   ||| | ||    | | ||| | ||   || ||  || | | ||||
GAATCAGAAATCCTGGAACAGATAGATCGAGATGTGAAAAGAACACATCCTGAAATGCCGTTTTTCTCTGCCAAGGCTAACCAGgtttcacttcagtgccttggaattccttatttccatttaaactacaagtaattgtcatttggactaaatttttcaaacacatttcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|78110295|gb|DV528710.1|DV528710
EST:     TAAAGCGAACACATCCTGATATTTCATTTTTCTCATCAAAGTCTAACCAG                         GAATCCTTGAGGAGAATTTTAATTATATTTTCAAAATTGAACCCCAGTATA
genomic: TAAAGCGAACACATCCTGATATTTCATTTTTCTCATCAAAGTCTAACCAGgtttgtattc ... accctatcagGAATCCTTGAGGAGAATTTTAATTATATTTTCAAAATTGAACCCCAGTATA
EST: gi|76011673|gb|DT938843.1|DT938843
EST:     TAAAGCGAACACATCCTGATATTTCATTTTTCTCATCAAAGTCTAACCAG                         GAATCCTTGAGGAGAATTTTAATTATATTTTCAAAATTGAACCCCAGTATA
genomic: TAAAGCGAACACATCCTGATATTTCATTTTTCTCATCAAAGTCTAACCAGgtttgtattc ... accctatcagGAATCCTTGAGGAGAATTTTAATTATATTTTCAAAATTGAACCCCAGTATA
EST: gi|76017397|gb|DT944567.1|DT944567
EST:     TAAAGCGAACACATCCTGATATTTCATTTTTCTCATCAAAGTCTAACCAG                         GAATCCTTGAGGAGAATTTTAATTATATTTTCAAAATTGAACCCCAGTATA
genomic: TAAAGCGAACACATCCTGATATTTCATTTTTCTCATCAAAGTCTAACCAGgtttgtattc ... accctatcagGAATCCTTGAGGAGAATTTTAATTATATTTTCAAAATTGAACCCCAGTATA