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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTGATGGTTAATATGAGGGACAATGACTCATCAAGCGACGCACAATTGGACGAGCCATTAGGACGGgtatcgatactctcttacggttctgggcatatgctcaacgacatcacatcgtcttgttggtttacctatttgcttgtgttcttgacagatctgggactta...

Basic information

species Zea mays
transcript GRMZM2G121458_T02
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G121458_T02 (Zea mays), 5'ss of exon 5
lower sequence: LOC_Os07g39010.2 (Oryza sativa), 5'ss of exon 2
---------------CTGATGGTTAATATGAGGGACAATGACTCATCAAGC-GACGCACAATTGGACGAGCCATTAGGACGGgtatcgatactctcttacggttctgggcatatgctcaacgacatcacatcgtcttgttggtttacctatttgc---ttgtgttcttgacaga----tctgggactta--------------
               |||  |  ||   | |  ||||     || ||| |  |    ||   |   |  |   |   ||| | ||| |    |     | |||  || || | ||    |    ||    | |||   ||| | |    ||||     |  |||| || ||| |    |||    | ||              
TACTTTCATATGGTTCTGG-GCATATGCTAAATGACATCACTTCTTCATGTTGGTTTACTTATTTGCTGGTTTTCTTGACAGATATTGGGCTTAGTCCAAGgta-tgtgcctttgagggatag-attttgttgtccatttgttctgttaatttttgtatcatgttatttacacatatttctaaatcatattgaatgaagccat