1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
TTCTACACAAAATTAGAGGAGAAACATAAAGCTTTGGAAGCAGAGAAGGACGAGGCTGAGGCCAGGAAAAAGgtaggaagaacttacttctgaattctgatatctctcttggaaagcaacccactgtaggtaaggtcacttgagttttctatattcttcttttgatcgattt...
species | Zea mays |
transcript | GRMZM2G121176_T03 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: AACATAAAGCTTTGGAAGCAGAGAAGGACGAGGCTGAGGCCAGGAAAAAG GATGAGCAAGACGTTGCTTTAAAACAACTAAGGAAGTCATTGGTGATTAGAEST: gi|76912444|gb|DV164735.1|DV164735
genomic: AACATAAAGCTTTGGAAGCAGAGAAGGACGAGGCTGAGGCCAGGAAAAAGgtaggaagaa ... atttgggtagGATGAGCAAGACGTTGCTTTAAAACAACTAAGGAAGTCATTGGTGATTAGA
EST: AACATAAAGCTTTGGAAGCAGAGAAGGACGAGGCTGAGGCCAGGAAAAAG GATGAGCAAGACGTTGCTTTAAAACAACTAAGGAAGTCATTGGTGATTAGAEST: gi|17930498|gb|BM267458.1|BM267458
genomic: AACATAAAGCTTTGGAAGCAGAGAAGGACGAGGCTGAGGCCAGGAAAAAGgtaggaagaa ... atttgggtagGATGAGCAAGACGTTGCTTTAAAACAACTAAGGAAGTCATTGGTGATTAGA
EST: AACATAAAGCTTTGGAAGCAGAGAAGGACGAGGCTGAGGCCAGGAAAAAG GATGAGCAAGACGTTGCTTTAAAACAACTAAGGAAGTCATTGGTGATTAGAEST: gi|60352413|gb|DN219386.1|DN219386
genomic: AACATAAAGCTTTGGAAGCAGAGAAGGACGAGGCTGAGGCCAGGAAAAAGgtaggaagaa ... atttgggtagGATGAGCAAGACGTTGCTTTAAAACAACTAAGGAAGTCATTGGTGATTAGA
EST: CAGAGAAGGACGAGGCTGAGGCCAGGAAAAAG GATGAGCAAGACGTTGCTTTAAAACAACTAAGGAAGTCATTGGTGATTAGAEST: gi|71441125|gb|DR822175.1|DR822175
genomic: CAGAGAAGGACGAGGCTGAGGCCAGGAAAAAGgtaggaagaa ... atttgggtagGATGAGCAAGACGTTGCTTTAAAACAACTAAGGAAGTCATTGGTGATTAGA
EST: AACATAAAGCTTTGGAAGCAGAGAAGGACGAGGCTGAGGCCAGGAAAAAG GATGAGCAAGACGTTGCTTTAAAACAACTAAGGAAGTCATTGGTGATTAGAEST: gi|78120261|gb|DV538645.1|DV538645
genomic: AACATAAAGCTTTGGAAGCAGAGAAGGACGAGGCTGAGGCCAGGAAAAAGgtaggaagaa ... atttgggtagGATGAGCAAGACGTTGCTTTAAAACAACTAAGGAAGTCATTGGTGATTAGA
EST: TGGAAGCAGAGAAGGACGAGGCTGAGGCCAGGAAAAAG GATGAGCAAGACGTTGCTTTAAAACAACTAAGGAAGTCATTGGTGATTAGA
genomic: TGGAAGCAGAGAAGGACGAGGCTGAGGCCAGGAAAAAGgtaggaagaa ... atttgggtagGATGAGCAAGACGTTGCTTTAAAACAACTAAGGAAGTCATTGGTGATTAGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TTCTACACAAAATTAGAGGAGAAACATAAAGCTTTGGAAGCAGAGAAGGACGAGGCTGAGGCCAGGAAAAAGgtaggaagaacttacttctgaattctgatatctctcttggaaagcaacccactgtaggtaaggtcacttgagttttctatattcttcttttgatcgattt
- - - - - - - - - - - - - - - - - TGGAAG