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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTGATCAAAATAAAAAGCGGATAGCATGGATTGAATGGAGCCATCCAAACATGCCCTGGGATAAATCAGAACTCTGGGTTGGTTACTTCGCCGAAAGCGGgtaattgtaattatcttgtgaataacatattagaacaggtttttttcttgcattcagttttattgtgaataaaagtactatcttgtctgcatcaaatgaa...

Basic information

species Zea mays
transcript GRMZM2G120302_T02
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G120302_T01 (Zea mays), 5'ss of exon 5
lower sequence: LOC_Os06g11180.1 (Oryza sativa), 5'ss of exon 5
TTGATCAAAATAAAAAGCGGATAGCATGGATTGAATGGAGCCATCCAAACATGCCCTGGGATAAATCAGAACTCTGGGTTGGTTACTTCGCCGAAAGCGGgtaattgtaattatcttgtgaataacatattagaacaggtt---tttttcttgcattcagttttattgtgaataaaagtactatcttgtctgcatcaaatgaa
|||| || ||||| ||||| || |||||||| || ||||| |||||||| |||||||||||||| |||||||| |||||||| |||||| | ||||||||||||     ||||||||  |||   |||||||||||| | |   |||||||| || |||| |  | | | || ||||  | | |    |  |     |  || 
TTGACCATAATAACAAGCGTATGGCATGGATAGAGTGGAGTCATCCAAATATGCCCTGGGATAAGTCAGAACTTTGGGTTGGCTACTTCTCTGAAAGCGGgtaagcaacattatctttagaaatgcatattagaacatgctgcctttttcttccaatcaggt--aatataaacaaaacaaatgttacattcgggatgacaga-

upper sequence: GRMZM2G120302_T01 (Zea mays), 5'ss of exon 5
lower sequence: GLYMA08G42730.1 (Glycine max), 5'ss of exon 5
TTGATCAAAATAAAAAGCGGATAGCATGGATTGAATGGAGCCATCCAAACATGCCCTGGGATAAATCAGAACTCTGGGTTGGTTACTTCGCCGAAAGCGGgtaattgtaattatcttgtgaataacatattagaacaggtttttttcttgcattcagttttattgtgaataaaagtactatcttgtctgcatcaaatgaa-
|||||| ||| |   |  | || || |||||| | ||||| ||||| |||||||| ||||||||||||||||| |||||||| ||  |  | |||| ||||| | |  || |   || | | |   |  ||  || |   || ||| ||    | |    | |  | | | |    || ||    |   | |    |    
TTGATCCAAAAAGTGAAAGAATGGCTTGGATTCAGTGGAGTCATCCCAACATGCCGTGGGATAAATCAGAACTATGGGTTGGCTATATTTCTGAAAACGGgtgagtagaact-ctttattatttgtaacttgaaaaattattgtttgtttatcttataggtctcctaattgaggtgacaatgaaataatctttggtttttt

upper sequence: GRMZM2G120302_T01 (Zea mays), 5'ss of exon 5
lower sequence: AT5G36210.1 (Arabidopsis thaliana), 5'ss of exon 5
TTGATCAAAATAAAAAGCGGATAGCATGGATTGAATGGAGCCATCCAAACATGCCCTGGGATAAATCAGAACTCTGGGTTGGTTACTTCGCCGAAAGCGGgtaattgtaattatcttgtgaataacatattagaacaggtttttttcttgcattcagttttattgtgaataaaagtactatcttgtctgcatcaaatgaa
| ||||  ||     ||||  | ||||||||||||||||| || || || ||||| ||||||||| |||| || |||||||| ||| |  ||||  ||||||||  | | ||           ||  | ||  ||  | |||   | |||||         | | | ||| |||||   | | | ||||||         
TGGATCCCAAGTGTGAGCGATTGGCATGGATTGAATGGAGTCACCCTAATATGCCATGGGATAAAGCAGAGCTGTGGGTTGGGTACATTTCCGAGGGCGGgtaa--gcatttgc---------aatttttttcaaatgctttgcatattgca---------aatattaatcaaagttacaccct-tctgcag--------

upper sequence: GRMZM2G120302_T01 (Zea mays), 5'ss of exon 5
lower sequence: Vv18s0001g11140.t01 (Vitis vinifera), 5'ss of exon 5
TTGATCAAAATAAAAAGCGGATAGCATGGATTGAATGGAGCCATCCAAACATGCCCTGGGATAAATCAGAACTCTGGGTTGGTTACTTCGCCGAAAGCGGgtaattgtaattatcttgtgaataacatattagaacaggtttttttcttgcattcagttttattgtgaataaaagtactatcttgtctgcatcaaatgaa-
| || | |||     | ||| | ||||||||||||||||| ||||| || ||||| ||||||||| | ||||| |||||||||||  |  | || |  |||| | | | |||  |||     |  ||| |     |  ||   |||||||  | ||    |  | |    |     |||    | |      |   || | 
TGGACCCAAAAGGGGAACGGTTGGCATGGATTGAATGGAGTCATCCTAATATGCCATGGGATAAAACGGAACTATGGGTTGGTTATATTTCTGAGAATGGgtgagtatgattccctttcttgtg-catttcttctctagtgcatttcttgtttccaagactgatatttccattgacactcaaattttcttggcttgtgtat

upper sequence: GRMZM2G120302_T01 (Zea mays), 5'ss of exon 5
lower sequence: Vv18s0001g11150.t01 (Vitis vinifera), 5'ss of exon 5
TTGATCAAAATAAAAAGCGGATAGCATGGATTGAATGGAGCCATCCAAACATGCCCTGGGATAAATCAGAACTCTGGGTTGGTTACTTCGCCGAAAGCGGgtaattgtaattatcttgtgaataacatattagaac-----aggtttttttcttgcattcagttttattgtg--aataaaagtactatcttgtctgcatcaaatgaa
| ||    ||   | | ||||| ||||||||||| ||||| || || |||||||| ||||||||| ||||||| |||||||| ||  |  | || |  |||| | |   |||  ||| || ||       |||  |     ||  | ||||| |    | ||  ||||  |   | || || | | || || | | | |        
TGGACTCTAAAGGAGAACGGATTGCATGGATTGAGTGGAGTCACCCTAACATGCCTTGGGATAAAGCAGAACTTTGGGTTGGCTATATTTCAGAGAATGGgtgagtaggattcccttctgtatgctgccatagctctctccagtgtcttttcattttctgaggattatctttgcattagaaatccaattttcttttctta-------