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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGTGATTGTTTTTGTCCTGGTGTTCTATTTCTCCCCTCTCTATGGGCAGTCCAATGTGTTGATCTACACTGCCATTTGCTCTTTGATGGGCTCTCTTTCGgtaatgtcacttctgccagtggttcatatgttctctaaatgtttagtcgattgtattgatgtattctaatctactcgtgctagggattgtgctaactttttctctctcattattcag

Basic information

species Zea mays
transcript GRMZM2G120175_T03
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G120175_T03 (Zea mays), 5'ss of exon 5
lower sequence: LOC_Os05g43790.2 (Oryza sativa), 5'ss of exon 5
TGTGATTGTTTTTGTCCTGGTGTTCTATTTCTCCCCTCTCTATGGGCAGTCCAATGTGTTGATCTACACTGCCATTTGCTCTTTGATGGGCTCTCTTTCGgtaatgtcacttctgccagtggttcatatgttctctaaatgtttagtcgattgtattgatgtattctaatctactcgtgctagggattgtgctaactttttctctctcattattcag
 ||| | || || || || |||||| ||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| | |||    ||    | |||| |   |||||  |     || ||||   | | || ||| |     |||  | |  ||||||  |||   |      |||||||
AGTGGTGGTCTTCGTGCTAGTGTTCCATTTCTCCCCTCTATATGGGCAGTCAAATGTGTTGATCTACACTGCCATTTGCTCTTTGATGGGTTCTCTTTCGgtaatgtcacttataccatcaattgcagtattct-tggttgttttat-----gttttgaatgactttactctcc-----ctaatggtc-tgctaatgtttgtccata---tattcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|5895870|gb|AW037116.1|AW037116
EST:     CCAATGTGTTGATCTACACTGCCATTTGCTCTTTGATGGGCTCTCTTTCG                         GTTATGAGTGTTAAAGCTCTTGGTACATCACTAAAGCTTACTTTTGAGGGA
genomic: CCAATGTGTTGATCTACACTGCCATTTGCTCTTTGATGGGCTCTCTTTCGgtaatgtcac ... cattattcagGTTATGAGTGTTAAAGCTCTTGGTACATCACTAAAGCTTACTTTTGAGGGA
EST: gi|74234883|gb|DT642797.1|DT642797
EST:     CCAATGTGTTGATCTACACTGCCATTTGCTCTTTGATGGGCTCTCTTTCG                         GTTATGAGTGTTAAAGCTCTTG
genomic: CCAATGTGTTGATCTACACTGCCATTTGCTCTTTGATGGGCTCTCTTTCGgtaatgtcac ... cattattcagGTTATGAGTGTTAAAGCTCTTG
EST: gi|76281094|gb|DV020662.1|DV020662
EST:     CCAATGTGTTGATCTACACTGCCATTTGCTCTTTGATGGGCTCTCTTTCG                         GTTATGAGTGTTAAAGCTCTTGGTACATCACTAAAGCTTACTTTTGAGGGA
genomic: CCAATGTGTTGATCTACACTGCCATTTGCTCTTTGATGGGCTCTCTTTCGgtaatgtcac ... cattattcagGTTATGAGTGTTAAAGCTCTTGGTACATCACTAAAGCTTACTTTTGAGGGA
EST: gi|76287457|gb|DV027025.1|DV027025
EST:     ATTTGCTTTTTGATGGGCTCTCTTTCG                         GTTATGAGTGTAAAAGCTCTTGGTACATCACTAAAGCTTACTTTTGAGGGA
genomic: ATTTGCTCTTTGATGGGCTCTCTTTCGgtaatgtcac ... cattattcagGTTATGAGTGTTAAAGCTCTTGGTACATCACTAAAGCTTACTTTTGAGGGA