1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
TACCGCAACATGACAACTGTATTGACAAGGGAATACTTGGATGTGAGGCCGGATGGATGGTTGGATTATGCAGCTAAAAGGATCGCACAGCTgtaatcttattttttttcttcttcttttcttttaaagtgaaatcaacctctccacattggtactaattcttttgattttaaaatttggcag
species | Zea mays |
transcript | GRMZM2G119791_T07 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: GTGAGGCCGGATGGATGGTTGGATTATGCAGCTAAAAGGATCGCACAGCT TGGTGCTGATAAATGTTACAACCACACTCTCTGTGATGAACTTCTTAGCATEST: gi|78092057|gb|DV520431.1|DV520431
genomic: GTGAGGCCGGATGGATGGTTGGATTATGCAGCTAAAAGGATCGCACAGCTgtaatcttat ... aatttggcagTGGTGCTGATAAATGTTACAACCACACTCTCTGTGATGAACTTCTTAGCAT
EST: GTGAGGCCGGATGGATGGTTGGATTATGCAGCTAAAAGGATCGCACAGCT TGGTGCTGATAAATGTTACAACCACACTCTCTGTGATGAACTTCTTAGCATEST: gi|149080539|gb|EE169577.2|EE169577
genomic: GTGAGGCCGGATGGATGGTTGGATTATGCAGCTAAAAGGATCGCACAGCTgtaatcttat ... aatttggcagTGGTGCTGATAAATGTTACAACCACACTCTCTGTGATGAACTTCTTAGCAT
EST: GTGAGGCCGGATGGATGGTTGGATTATGCAGCTAAAAGGATCGCACAGCT TGGTGCTGATAAATGTTACAACCACACTCTCTGTGATGAACTTCTTAGCATEST: gi|76288008|gb|DV027576.1|DV027576
genomic: GTGAGGCCGGATGGATGGTTGGATTATGCAGCTAAAAGGATCGCACAGCTgtaatcttat ... aatttggcagTGGTGCTGATAAATGTTACAACCACACTCTCTGTGATGAACTTCTTAGCAT
EST: GTGAGGCCGGATGGATGGTTGGATTATGCAGCTAAAAGGATCGCACAGCT TGGTGCTGATAAATGTTACAACCACACTCTCTGTGATGAACTTCTTAGCATEST: gi|149082841|gb|EE172066.2|EE172066
genomic: GTGAGGCCGGATGGATGGTTGGATTATGCAGCTAAAAGGATCGCACAGCTgtaatcttat ... aatttggcagTGGTGCTGATAAATGTTACAACCACACTCTCTGTGATGAACTTCTTAGCAT
EST: GTGACGCCGGATGGATGGTTGGATTATGCAGCTAAAACGATCGCACAGCT TGGTGCTGATAAATGTTACAACCACACTCTCTGTGATGAACTTCTTAGCAT
genomic: GTGAGGCCGGATGGATGGTTGGATTATGCAGCTAAAAGGATCGCACAGCTgtaatcttat ... aatttggcagTGGTGCTGATAAATGTTACAACCACACTCTCTGTGATGAACTTCTTAGCAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TACCGCAACATGACAACTGTATTGACAAGGGAATACTTGGATGTGAGGCCGGATGGATGGTTGGATTATGCAGCTAAAAGGATCGCACAGCTgtaatcttattttttttcttcttcttttcttttaaagtgaaatcaacctctccacattggtactaattcttttgattttaaaatttggcag
- - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT