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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTCACAATGGACTATGCCCTTCTTCCCGATTATATGTTGCGGATTTTTCTTACAACTTTCTTGTCGGAAAAATTCCATCCTGCTTGAAATATCTTCCAAGgtactattacgtgatgtacttgctactatttcagtatttcataaagtttgcccatttaaaagtcctttttgcag

Basic information

species Zea mays
transcript GRMZM2G119759_T03
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G119759_T03 (Zea mays), 5'ss of exon 5
lower sequence: LOC_Os04g58700.2 (Oryza sativa), 5'ss of exon 6
CTCACAATGGACTATGCCCTTCTTCCCGATTATATGTTGCGGATTTTTCTTACAACTTTCTTGTCGGAAAAATTCCATCCTGCTTGAAATATCTTCCAAGgtactattacgtgatgtacttgctactatttcagtatttcataaagtttgcccatttaaaagtcctttttgcag
|||||||||| |||||||||||| | |||||| ||||||  ||||| || |||||||||||||| |||||||| ||| | |||||||| |||||||||||||| ||  |     |||  ||||||||  ||          ||| ||    ||||||| | | | | | |||||
CTCACAATGGGCTATGCCCTTCTCCTCGATTAAATGTTGGAGATTTCTCATACAACTTTCTTGTTGGAAAAATCCCACCGTGCTTGAAGTATCTTCCAAGgtagtaccatacagtgtgtttgctactgctt----------taaggtccatccatttacatggcttgtctgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|91050219|gb|EB160637.1|EB160637
EST:     TACAACTTTCTTGTCGGAAAAATTCCATCCTGCTTGAAATATCTTCCAGG                         GTCAAGTTTCCAAGGGAACTGCTTCCAGGATGAGTACTCTGTCCAACAACG
genomic: TACAACTTTCTTGTCGGAAAAATTCCATCCTGCTTGAAATATCTTCCAAGgtactattac ... ctttttgcagGTCAAGTTTCCAAGGGAACTGCTTCCAGGATGAGTACTCTGTCCAACAACG