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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCGTACAAGCCTGGTTACACTGCCCCAACCCAGGTGCATCATGATGAAACTACCATAGAGATAAGgtttgtcttctttactcatgaagctaaccatttttccttctatcatggcgtttatgtgaattatatttctgtgtaattttcaaaaagctttgtctttgtacactgtaatttataaatttctgtttttttttcttctcatttttgcattttttttaatttcctctag

Basic information

species Zea mays
transcript GRMZM2G118957_T04
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G118957_T04 (Zea mays), 5'ss of exon 5
lower sequence: LOC_Os02g36740.4 (Oryza sativa), 5'ss of exon 4
TCGTACAAGCCTGGTTACACTGCCCCAACCCAGGTGCATCATGATGAAACTACCATAGAGATAAGgtttgtcttctttactcatgaagctaaccatttttccttctatcatggcgtttatgtgaattatatttctgtgtaattttcaaaaagctttgtctttgtacactgtaatttataaatttctgtttttttttcttctcat-ttttgcattttttttaatttcctctag
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TCATACAAGCCTGGCTATACTGCCCCACCCCAGGTACATCATGATGAGACTACTATAGAGATCAGgttggtat-cttcattcatgaaaa-----atcttctttcgtatcctagtacttttgtgaataa-atttctgagtgaatataaaataa-----tccctaagcac---aattcttaacttctcgtgtctctatctcgtcctattctccag-------------------