Sequence
atgc intronic sequence ATGC exonic sequenceGCTTCAAAGGTCTTACAGATGGACCGCAACAGCTTGGAACATCTTTTGCACCATTTCTGTGGAGTAGCTGCAAATAAAGAgtatgtgattctgtttacctccttaacgcttccagtttacaggttccatgtcatgggaactgtaaagcatgatatacattttcctgcag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G118917_T02 (Zea mays), 5'ss of exon 5
lower sequence: LOC_Os10g30100.1 (Oryza sativa), 5'ss of exon 5
GCTTCAAAGGTCTTACAGATGGACCGCAACAGCTTGGAACATCTTTTGCACCATTTCTGTGGAGTAGCTGCAAATAAAGAgtatgtgattctgtttacctccttaacgcttccagtttacaggttccatgtcatgggaact-gtaaagcatgatatacattttcctgcag----------------------------------------
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GCTTCAAGAATCTTGCAGATGGACCGCAACAGCCTGGAGCATCTTTTGCATCATTTCTGTGGAGTGACTGCAAACAAAGAgtacttgcaattttttgtttt----atgcccataacacattagcactccaatatgccaacttgtctaccatgtcatgaattttattccagaagacatgactaagacatacaatcatacatgtcattgcag
upper sequence: GRMZM2G118917_T02 (Zea mays), 5'ss of exon 5
lower sequence: AT5G35910.1 (Arabidopsis thaliana), 5'ss of exon 5
GCTTCAAAGGTCTTACAGATGGACCGCAACAGCTTGGAACATCTTTTGCACCATTTCTGTGGAGTAGCTGCAAATAAAGAgtatgtgattctgtttacctccttaacgcttccagtttacaggttccatgtcatgggaactgtaaagcatgatatacattttcctgcag
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GCCTCCAGGGTTCTAAATTTGGAGAGAAATAGCCTGGAGTTTCTTTTGCAGCATTTTTGTGGAGTGACTGCAAATAAAGAgt---tagtactagt--cctatctggattttgtatcactctcgtc---tatcactggacttccaaattctgatttgtttattgctgtagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|211507738|gb|FL332402.1|FL332402EST: GCTTGGAACATCTTTTGCACCATTTCTGTGGAGT-GTCTGCAAATAAAGA ATACCAAGCTGCAGATTGGAGATTGAGGCCCCTTCCTGATGAAATGATCAA
genomic: GCTTGGAACATCTTTTGCACCATTTCTGTGGAGTAG-CTGCAAATAAAGAgtatgtgatt ... tttcctgcagATACCAAGCTGCAGATTGGAGATTGAGGCCCCTTCCTGATGAAATGATCAA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GCTTCAAAGGTCTTACAGATGGACCGCAACAGCTTGGAACATCTTTTGCACCATTTCTGTGGAGTAGCTGCAAATAAAGAgtatgtgattctgtttacctccttaacgcttccagtttacaggttccatgtcatgggaactgtaaagcatgatatacattttcctgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC