1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
GAACCCGAAGAACTTTTCGAGACAATCTCGCAAGCATTGCAGGCATCTGTTGATCGCGACTGCCTCAGCGGCTGGGGAGGTTATGTTCTTGTTGTgtaagttccccacaccttttcaaataattatagtaaaaataaatgcttgttcagtcagctccattgagcgtcaagggctgggtaattcgccagttgaatt...
species | Zea mays |
transcript | GRMZM2G117544_T02 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: TCTGGTGATCGCGACTGCCTCAGCGGCTGGGGAGGTTATGTTCTTGTTGT CACACCCACTGAAGTGCAGGAGAGAGTGCTGAAGGGAAGGATGGACTGATGEST: gi|88758274|gb|DY542415.1|DY542415
genomic: TCTGTTGATCGCGACTGCCTCAGCGGCTGGGGAGGTTATGTTCTTGTTGTgtaagttccc ... ctggatgcagCACACACACTGAAGTGCAGGAGAGAGTGCTGAAGGGAAGGATGGACTGATG
EST: TCTGTTGATCGCGACTGCCTCAGCGGCTGGGGAGGTTATGTTCTTGTTGT CACACACACTGAAGTGCAGGAGAGAGTGCTGAAGGGAAGGATGGACTGATGEST: gi|94476825|gb|EB705783.1|EB705783
genomic: TCTGTTGATCGCGACTGCCTCAGCGGCTGGGGAGGTTATGTTCTTGTTGTgtaagttccc ... ctggatgcagCACACACACTGAAGTGCAGGAGAGAGTGCTGAAGGGAAGGATGGACTGATG
EST: TCTGTTGATCGCGACTGCCTCAGCGGCTGGGGAGGTTATGTTCTTGTTGT CACACACACTGAAGTGCAGGAGAGAGTGCTGAAGGGAAGGATGGACTGATGEST: gi|32848246|gb|CD987927.1|CD987927
genomic: TCTGTTGATCGCGACTGCCTCAGCGGCTGGGGAGGTTATGTTCTTGTTGTgtaagttccc ... ctggatgcagCACACACACTGAAGTGCAGGAGAGAGTGCTGAAGGGAAGGATGGACTGATG
EST: TCTGTT-ATCGCGACTGCCTCAGCGGCTGGGGAGGTCATGTTCTTGTTGT CACACCCACTGAAGTGCAGGAGAGAGTGCTGAAGGGAAGGATGGACTGATGEST: gi|32844036|gb|CD983717.1|CD983717
genomic: TCTGTTGATCGCGACTGCCTCAGCGGCTGGGGAGGTTATGTTCTTGTTGTgtaagttccc ... ctggatgcagCACACACACTGAAGTGCAGGAGAGAGTGCTGAAGGGAAGGATGGACTGATG
EST: TCTGTTGATCGCGACTGCCTCAGCGGCTGGGGAGGTTATGTTCTTGTTGT CACACCCACTGAAGTGCAGGAGAGAGTGCTGAAGGGAAGGATGGACTGATGEST: gi|166616877|gb|EG290576.1|EG290576
genomic: TCTGTTGATCGCGACTGCCTCAGCGGCTGGGGAGGTTATGTTCTTGTTGTgtaagttccc ... ctggatgcagCACACACACTGAAGTGCAGGAGAGAGTGCTGAAGGGAAGGATGGACTGATG
EST: CAGCGGCTGGGGAGGTTATGTTCTTGTTGT CACACCCACTGAAGTGCAGGAGAGAGTGCTGAAGGGAAGGATGGACTGATGEST: gi|211034562|gb|FL157508.1|FL157508
genomic: CAGCGGCTGGGGAGGTTATGTTCTTGTTGTgtaagttccc ... ctggatgcagCACACACACTGAAGTGCAGGAGAGAGTGCTGAAGGGAAGGATGGACTGATG
EST: TCTGTTGATCGCGACTGCCTCAGTGGCTGGGGAGGTTATGTTCTTGTTGT CACACCCACTGAAGTGCAGGAGAGAGTGCTGAAGGGAAGGATGGACTGATGEST: gi|32845419|gb|CD985100.1|CD985100
genomic: TCTGTTGATCGCGACTGCCTCAGCGGCTGGGGAGGTTATGTTCTTGTTGTgtaagttccc ... ctggatgcagCACACACACTGAAGTGCAGGAGAGAGTGCTGAAGGGAAGGATGGACTGATG
EST: TCTGTTGATCGCGACTGCCTCAGCGGCTGGGGAGGTTATGTTCTTGTTGT CACACCCACTGAAGTGCAGGAGAGAGTGCTGAAGGGAAGGATGGACTGATGEST: gi|30088206|gb|CB886411.1|CB886411
genomic: TCTGTTGATCGCGACTGCCTCAGCGGCTGGGGAGGTTATGTTCTTGTTGTgtaagttccc ... ctggatgcagCACACACACTGAAGTGCAGGAGAGAGTGCTGAAGGGAAGGATGGACTGATG
EST: TCTGTTGATCGCGACTGCCTCAGCGGCTGGGGAGGTTATGTTCTTGTTGT CACACACACTGAAGTGCAGGAGAGAGTGCTGAAGGGAAGGATGGACTGATGEST: gi|88758273|gb|DY542414.1|DY542414
genomic: TCTGTTGATCGCGACTGCCTCAGCGGCTGGGGAGGTTATGTTCTTGTTGTgtaagttccc ... ctggatgcagCACACACACTGAAGTGCAGGAGAGAGTGCTGAAGGGAAGGATGGACTGATG
EST: TCTGTTGATCGCGACTGCCTCAGCGGCTGGGGAGGTTATGTTCTTGTTGT CACACACACTGAAGTGCAGGAGAGAGTGCTGAAGGGAAGGATGGACTGATG
genomic: TCTGTTGATCGCGACTGCCTCAGCGGCTGGGGAGGTTATGTTCTTGTTGTgtaagttccc ... ctggatgcagCACACACACTGAAGTGCAGGAGAGAGTGCTGAAGGGAAGGATGGACTGATG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GAACCCGAAGAACTTTTCGAGACAATCTCGCAAGCATTGCAGGCATCTGTTGATCGCGACTGCCTCAGCGGCTGGGGAGGTTATGTTCTTGTTGTgtaagttccccacaccttttcaaataattatagtaaaaataaatgcttgttcagtcagctccattgagcgtcaagggctgggtaattcgccagttgaatt
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