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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGAACTAGCAAAAGATTTTGTGGTCTCCGGTACTGCTTCAGAGTCACTTTATGGTGCTTGTGAGTCCATGTATAAGCCAAACATGgttagtttctttacacgagaactcgatacagaaaacctttaactgccaattctttctagtttgagttgtttttgaaagtatttggtattctattatgtgt...

Basic information

species Zea mays
transcript GRMZM2G117544_T01
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G117544_T01 (Zea mays), 5'ss of exon 5
lower sequence: LOC_Os02g08520.1 (Oryza sativa), 5'ss of exon 5
GGAACTAGCAAAAGATTTTGTGGTCTCCGGTACTGCTTCAGAGTCACTTTATGGTGCTTGTGAGTCCATGTATAAGCCAAACATGgttagtttctttacacgagaactcgatacagaa-aacctttaactgccaattctttctagtttga-gttgtt--tttgaaagtatttggt----attctattatgtgt--
||||||||| |||||||||||||| || || ||||||||||| ||||| ||||||||||||||||||||||||||||||| ||||||||||||    ||| || ||||   | |||||     ||| |||   | ||   |||  ||      |||     ||| | | ||  ||    ||| | ||  |||   
GGAACTAGCGAAAGATTTTGTGGTTTCTGGCACTGCTTCAGAATCACTATATGGTGCTTGTGAGTCCATGTATAAGCCAAGCATGgttagttt----acatgaaaactatctgcagaatggtattttacttatagtttggtctccttgagcactgtaaacatgacatttttctgtcacaattttctttggtgaag

upper sequence: GRMZM2G117544_T01 (Zea mays), 5'ss of exon 5
lower sequence: GLYMA14G24270.3 (Glycine max), 5'ss of exon 4
GGAACTAGCAAAAGATTTTGTGGTCTCCGGTACTGCTTCAGAGTCACTTTATGGTGCTTGTGAGTCCATGTATAAGCCAAACATGgttagtttctttacacgagaactcgatacagaaa-acctttaactgccaattctttctagtttgagttgtttttgaaagtatttggtattctattatgtgt
||| || |||||||||||||| || || || ||||| || ||||| || ||||||||||||||| | |||| ||||||  |||||||  ||  |   ||  |     |   |   |     |   | | ||  | |  | | |      | ||    | || | | | | | | || |    |   
GGAGCTTGCAAAAGATTTTGTTGTTTCTGGCACTGCATCTGAGTCTCTGTATGGTGCTTGTGAGGCAATGTTTAAGCCTGACATGgtaggtcacaaaacttgtttgttttttgtggttttgcaaattaatgt-agtcgtgttttaccatacttaacatggataatttctagcaatcaacccagaaa

upper sequence: GRMZM2G117544_T01 (Zea mays), 5'ss of exon 5
lower sequence: GLYMA06G11930.1 (Glycine max), 5'ss of exon 3
GGAACTAGCAAAAGATTTTGTGGTCTCCGGTACTGCTTCAGAGTCACTTTATGGTGCTTGTGAGTCCATGTATAAGCCAAACATGgttagtttctttacacgagaactcgatacagaaaacctttaactgccaattctttctagtttgagttgtttttgaaagtatttggtattctattatgtgt------------
|||||| |||||||||||||  ||  | || ||||| || ||||| |||||||||||||||||||| |||| ||||||  |||||||| || ||          || || ||        ||||||| || || || |||     ||      ||  || |  || |   |||| | || |||||            
GGAACTTGCAAAAGATTTTGCAGTGGCTGGCACTGCATCCGAGTCTCTTTATGGTGCTTGTGAGTCAATGTTTAAGCCTGACATGgtttgtctc--------gaaattcaatttgttg--cctttaa-tgtcactttttttagaatttgcaaattcctgcatttagtctatattttgtt-tgtgttgcttgagtttt

upper sequence: GRMZM2G117544_T01 (Zea mays), 5'ss of exon 5
lower sequence: GLYMA04G42830.1 (Glycine max), 5'ss of exon 3
GGAACTAGCAAAAGATTTTGTGGTCTCCGGTACTGCTTCAGAGTCACTTTATGGTGCTTGTGAGTCCATGTATAAGCCAAACATGgttagtttctttacacgagaactcgatacagaaaacctttaactgccaattctttctagtttgagttgtttttgaaagtat-ttggtattctattatgtgt------
|||||| |||||||||||||| ||  | || ||||| || ||||| |||||||||||||||||||| |||| ||||||  |||||||| || ||   |  |   || | | | |     |  ||   ||     || |||  | ||||     ||  || |  ||| |   |||| | || ||| |      
GGAACTTGCAAAAGATTTTGTAGTGGCTGGCACTGCATCCGAGTCTCTTTATGGTGCTTGTGAGTCAATGTTTAAGCCTGACATGgtttgtctcgaaattc---aatttgttgcctttgatgtt--gcttttttttttttagaatttgcaa-attcctgcagttatatctatattttgtt-tgtattgcttg

upper sequence: GRMZM2G117544_T01 (Zea mays), 5'ss of exon 5
lower sequence: GLYMA13G10130.1 (Glycine max), 5'ss of exon 4
GGAACTAGCAAAAGATTTTGTGGTCTCCGGTACTGCTTCAGAGTCACTTTATGGTGCTTGTGAGTCCATGTATAAGCCAAACATGgttagtttctttacacgagaactcgatacagaaaacctttaact------gccaattctttctagtttgagttgt-ttttgaaagtatttggtattctattatgtgt
||| || |||||||||||||| || || || ||||| || ||||| || ||||||||||||||| | |||| ||||||  |||||||| ||  |   | |    |||| | |       |  |||   |        |||     ||  || ||  |  |  ||| ||  |   | || |  |   ||    
GGAGCTTGCAAAAGATTTTGTTGTTTCTGGGACTGCATCTGAGTCTCTGTATGGTGCTTGTGAGGCGATGTTTAAGCCTGACATGgttggtccc---aaagactaacttgttttgtcttatatttggttttgtgaatcaacatagtcgtgtgtgtatcatacttttaatatggatagtttcttgcaat----

upper sequence: GRMZM2G117544_T01 (Zea mays), 5'ss of exon 5
lower sequence: AT1G21720.1 (Arabidopsis thaliana), 5'ss of exon 5
GGAACTAGCAAAAGATTTTGTGGTCTCCGGTACTGCTTCAGAGTCACTTTATGGTGCTTGTGAGTCCATGTATAAGCCAAACATGgttagtttctttaca-cgagaactcgatacagaaaacctttaactgccaattctttcta-gtttgagttgtttt-tgaaagtatttggtattctattatgtgt
 ||  |||| ||||||||||| || || || ||||||||||| ||||| ||||| ||||||||| | ||||| |||||| | |||||| |     | ||| |   | |          | |  | ||| | || |   |    | | || | ||      |  | |  ||  | | | |  || ||  
AGAGTTAGCTAAAGATTTTGTTGTATCTGGAACTGCTTCAGAATCACTCTATGGAGCTTGTGAGGCAATGTACAAGCCAGATATGgtttgcccgctaacaacctcatcatctcttgttatatttctaaatcccgacaatgaaaatgcttaaattaccacatctaggcgtt--gcagtttggtaggtt-

upper sequence: GRMZM2G117544_T01 (Zea mays), 5'ss of exon 5
lower sequence: AT1G77440.1 (Arabidopsis thaliana), 5'ss of exon 5
GGAACTAGCAAAAGATTTTGTGGTCTCCGGTACTGCTTCAGAGTCACTTTATGGTGCTTGTGAGTCCATGTATAAGCCAAACATGgttagtttctttacacgagaactcgatacagaaaacctttaactgccaattctttctagtttgagttgtttttgaaagtatttggtat--tctattatgtgt------
|||  |||| ||||||||||| ||||| || ||||||||||| || || |||||||| |||||  ||||||  || ||| | |||||  ||  |||     || |||| | |   | |  |  || ||||   || ||  | | | || |||  |      |  ||||||||   ||  | || |||      
GGAGTTAGCTAAAGATTTTGTTGTCTCGGGAACTGCTTCAGAATCTCTATATGGTGCCTGTGAAGCCATGTTCAAACCAGATATGgtatgtgccttc---tgaaaacttgtttttgtac-cgattcactg--gatact--caaatgtgtgtttatcacctgaaaatttggtaggatcattcatatgtaagtat

upper sequence: GRMZM2G117544_T01 (Zea mays), 5'ss of exon 5
lower sequence: PP1S138_33V6.1 (Physcomitrella patens), 5'ss of exon 6
GGAACTAGCAAAAGATTTTGTGGTCTCCGGTACTGCTTCAGAGTCACTTTATGGTGCTTGTGAGTCCATGTATAAGCCAAACATGgttagtttctttacacgagaactcgatacagaaaacctttaactgccaat-tctttctagtttgagttgtttttgaaagta---tttggtattctattatgtgt--------------------------------
| || | ||||| |||||||||||||| || ||||||||||||||  | |||||||| || || || ||||| || ||  |  ||||  | |  |  |    | |        |    |   ||||  |  || |  ||||  ||||     | | || |  || |   ||  ||  |  | |  |||                                 
GCAATTGGCAAAGGATTTTGTGGTCTCTGGAACTGCTTCAGAGTCTTTATATGGTGCCTGCGAATCTATGTACAAACCTGATTTGgtatgctaatccaattcatactgaatcgcgctgattatttattttgcattacctttggagttcttagtatcttggtgagcacgtttctgtgctgaactg-gtgcttacaagttgtatgctccctttcttttttcag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|89247888|gb|DY619674.1|DY619674
EST:     CTTCAGAGTCACTTTATGGTGCTTGTGAGTCCATGTATAAGCCAAACATG                         GAACCCGAAGAACTTTTCGAGACAATCTCGCAAGCATTGCAGGCATCTGTT
genomic: CTTCAGAGTCACTTTATGGTGCTTGTGAGTCCATGTATAAGCCAAACATGgttagtttct ... tggtatgaagGAACCCGAAGAACTTTTCGAGACAATCTCGCAAGCATTGCAGGCATCTGTT
EST: gi|60356716|gb|DN223689.1|DN223689
EST:     CTTCAGAGTCACTTTATGGTGCTTGTGAGTCCATGTATAAGCCAAACATG                         GAACCCGAAGAACTTTTCGAGACAATCTCGCAAGCATTGCAGGCATCTGTT
genomic: CTTCAGAGTCACTTTATGGTGCTTGTGAGTCCATGTATAAGCCAAACATGgttagtttct ... tggtatgaagGAACCCGAAGAACTTTTCGAGACAATCTCGCAAGCATTGCAGGCATCTGTT
EST: gi|71429028|gb|DR810078.1|DR810078
EST:     CTTCAGAGTCACTTTATGGTGCTTGTGAGTCCATGTATAAGCCAAACATG                         GAACCCGAAGAACTTTTCGAGACAATCTCGCAAGCATTGCAGGCATCTGTT
genomic: CTTCAGAGTCACTTTATGGTGCTTGTGAGTCCATGTATAAGCCAAACATGgttagtttct ... tggtatgaagGAACCCGAAGAACTTTTCGAGACAATCTCGCAAGCATTGCAGGCATCTGTT
EST: gi|148995894|gb|EE035134.2|EE035134
EST:     CTTCAGAGTCACTTTATGGTGCTTGTGAGTCCATGTATAAGCCAAACATG                         GAACCCGAAGAACTTTTCGAGACAATCTCGCAAGCATTGCAGGCATCTGTT
genomic: CTTCAGAGTCACTTTATGGTGCTTGTGAGTCCATGTATAAGCCAAACATGgttagtttct ... tggtatgaagGAACCCGAAGAACTTTTCGAGACAATCTCGCAAGCATTGCAGGCATCTGTT
EST: gi|32844693|gb|CD984374.1|CD984374
EST:     CTTCAGAGTCACTTTATGGTGCTTGTGAGTCCATGTATAAGCCAAACATG                         GAACCCGAAGAACTTTTCGAGACAATCTCGCAAGCATTGCAAGCATCTGGT
genomic: CTTCAGAGTCACTTTATGGTGCTTGTGAGTCCATGTATAAGCCAAACATGgttagtttct ... tggtatgaagGAACCCGAAGAACTTTTCGAGACAATCTCGCAAGCATTGCAGGCATCTGTT
EST: gi|76288304|gb|DV027872.1|DV027872
EST:     CTTCAGAGTCACTTTATGGTGCTTGTGAGTCCATGTATAAGCCAAACATG                         GAACCCGAAGAACTTTTCGAGACAATCTCGCAAGCATTGCAGGCATCTGTT
genomic: CTTCAGAGTCACTTTATGGTGCTTGTGAGTCCATGTATAAGCCAAACATGgttagtttct ... tggtatgaagGAACCCGAAGAACTTTTCGAGACAATCTCGCAAGCATTGCAGGCATCTGTT
EST: gi|76288303|gb|DV027871.1|DV027871
EST:     CTTCAGAGTCACTTTATGGTGCTTGTGAGTCCATGTATAAGCCAAACATG                         GAACCCGAAGAACTTTTCGAGACAATCTCGCAAGCATTGCAGGCATCTGTT
genomic: CTTCAGAGTCACTTTATGGTGCTTGTGAGTCCATGTATAAGCCAAACATGgttagtttct ... tggtatgaagGAACCCGAAGAACTTTTCGAGACAATCTCGCAAGCATTGCAGGCATCTGTT
EST: gi|37379861|gb|CF626698.1|CF626698
EST:     CTTCAGAGTCACTTTATGGTGCTTGTGAGTCCATGTATAAGCCAAACATG                         GAACCCGAAGAACTTTTCGAGACAATCTCGCAAGCTTTGCAGGCATCTGTT
genomic: CTTCAGAGTCACTTTATGGTGCTTGTGAGTCCATGTATAAGCCAAACATGgttagtttct ... tggtatgaagGAACCCGAAGAACTTTTCGAGACAATCTCGCAAGCATTGCAGGCATCTGTT
EST: gi|89758446|gb|DY687621.1|DY687621
EST:     CTTCAGAGTCACTTTATGGTGCTTGTGAGTCCATGTATAAGCCAAACATG                         GAACCCGAAGAACTTTTCGAGACAATCTCGCAAGCATTGCAGGCATCTGTT
genomic: CTTCAGAGTCACTTTATGGTGCTTGTGAGTCCATGTATAAGCCAAACATGgttagtttct ... tggtatgaagGAACCCGAAGAACTTTTCGAGACAATCTCGCAAGCATTGCAGGCATCTGTT
EST: gi|71429029|gb|DR810079.1|DR810079
EST:     CTTCAGAGTCACTTTATGGTGCTTGTGAGTCCATGTATAAGCCAAACATG                         GAACCCGAAGAACTTTTCGAGACAATCTCGCAAGCATTGCAGGCATCTGTT
genomic: CTTCAGAGTCACTTTATGGTGCTTGTGAGTCCATGTATAAGCCAAACATGgttagtttct ... tggtatgaagGAACCCGAAGAACTTTTCGAGACAATCTCGCAAGCATTGCAGGCATCTGTT
EST: gi|88758274|gb|DY542415.1|DY542415
EST:     CTTCAGAGTCACTTTATGGTGCTTGTGAGTCCATGTATAAGCCAAACATG                         GAACCCGAAGAACTTTTCGAGACAATCTCGCAAGCATTGCAGGCATCTGTT
genomic: CTTCAGAGTCACTTTATGGTGCTTGTGAGTCCATGTATAAGCCAAACATGgttagtttct ... tggtatgaagGAACCCGAAGAACTTTTCGAGACAATCTCGCAAGCATTGCAGGCATCTGTT
EST: gi|94476825|gb|EB705783.1|EB705783
EST:     CTTCAGAGTCACTTTATGGTGGTTGTGAGTCCATGTATAAGCCAAACATG                         GAACCCGAAGAACTTTTCGAGACAATCTCGCAAGCATTGCAGGCATCTGTT
genomic: CTTCAGAGTCACTTTATGGTGCTTGTGAGTCCATGTATAAGCCAAACATGgttagtttct ... tggtatgaagGAACCCGAAGAACTTTTCGAGACAATCTCGCAAGCATTGCAGGCATCTGTT
EST: gi|60395143|gb|DN228012.1|DN228012
EST:     CTTCAGAGTCACTTTATGGTGCTTGTGAGTCCATGTATAAGCCAAACATG                         GAACCCGAAGAACTTTTCGAGACAATCTCGCAAGCATTGCAGGCATCTGTT
genomic: CTTCAGAGTCACTTTATGGTGCTTGTGAGTCCATGTATAAGCCAAACATGgttagtttct ... tggtatgaagGAACCCGAAGAACTTTTCGAGACAATCTCGCAAGCATTGCAGGCATCTGTT
EST: gi|88754192|gb|DY538333.1|DY538333
EST:     CTTCAGAGTCACTTTATGGTGCTTGTGAGTCCATGTATAAGCCAAACATG                         GAACCCGAAGAACTTTTCGAGACAATCTCGCAAGCATTGCAGGCATCTGTT
genomic: CTTCAGAGTCACTTTATGGTGCTTGTGAGTCCATGTATAAGCCAAACATGgttagtttct ... tggtatgaagGAACCCGAAGAACTTTTCGAGACAATCTCGCAAGCATTGCAGGCATCTGTT
EST: gi|60398269|gb|DN231085.1|DN231085
EST:     CTTCAGAGTCACTTTATGGTGCTTGTGAGTCCATGTATAAGCCAAACATG                         GAACCCGAAGAACTTTTCGAGACAATCTCGCAAGCATTGCAGGCATCTGTT
genomic: CTTCAGAGTCACTTTATGGTGCTTGTGAGTCCATGTATAAGCCAAACATGgttagtttct ... tggtatgaagGAACCCGAAGAACTTTTCGAGACAATCTCGCAAGCATTGCAGGCATCTGTT
EST: gi|148987000|gb|EE030820.2|EE030820
EST:     CTTCAGAGTCACTTTATGGTGCTTGTGAGTCCATGTATAAGCCAAACATG                         GAACCCGAAGAACTTTTCGAGACAATCTCGCAAGCATTGCAGGCATCTGTT
genomic: CTTCAGAGTCACTTTATGGTGCTTGTGAGTCCATGTATAAGCCAAACATGgttagtttct ... tggtatgaagGAACCCGAAGAACTTTTCGAGACAATCTCGCAAGCATTGCAGGCATCTGTT
EST: gi|32848246|gb|CD987927.1|CD987927
EST:     CTTCAGAGTCAGTTTATGGTGCTTGTGAGTCCATGTATAAGCCAAACATG                         GAACCCGAAGAACTTTTCGAGACAATCTCGCAAGCATTGCAAGCATCTGTT
genomic: CTTCAGAGTCACTTTATGGTGCTTGTGAGTCCATGTATAAGCCAAACATGgttagtttct ... tggtatgaagGAACCCGAAGAACTTTTCGAGACAATCTCGCAAGCATTGCAGGCATCTGTT
EST: gi|32844036|gb|CD983717.1|CD983717
EST:     CTTCAGAGTCACTTTATGGTGCTTGTGAGTCCATGTATAAGCCAAACATG                         GAACCCGAAGAACTTTTCGAGACAATCTCGCAAGCATTGCAAGCATCTGTT
genomic: CTTCAGAGTCACTTTATGGTGCTTGTGAGTCCATGTATAAGCCAAACATGgttagtttct ... tggtatgaagGAACCCGAAGAACTTTTCGAGACAATCTCGCAAGCATTGCAGGCATCTGTT
EST: gi|67012342|gb|CO441091.1|CO441091
EST:     CTTCAGAGTCACTTTATGGTGCTTGTGAGTCCATGTATAAGCCAAACATG                         GAACCCGAAGAACTTTTCGAGACACTCTCGCAAGCATTGCAGGCATCTGTT
genomic: CTTCAGAGTCACTTTATGGTGCTTGTGAGTCCATGTATAAGCCAAACATGgttagtttct ... tggtatgaagGAACCCGAAGAACTTTTCGAGACAATCTCGCAAGCATTGCAGGCATCTGTT
EST: gi|161592540|gb|EY962985.1|EY962985
EST:     TTCAGAGTCACTTTATGGTGCTTGTGAGTCCATGTATAAGACCAAACATG                         GAACCCGAAGAACTTTTCGAGACAATCTCGCAAGCATTG
genomic: TTCAGAGTCACTTTATGGTGCTTGTGAGTCCATGTATAAG-CCAAACATGgttagtttct ... tggtatgaagGAACCCGAAGAACTTTTCGAGACAATCTCGCAAGCATTG
EST: gi|211034562|gb|FL157508.1|FL157508
EST:     CTTCAGAGTCACTTTATGGTGCTTGTGAGTCCATGTATAAGCCAAACATG                         GAACCCGAAGAACTTTTCGAGACAATCTCGCAAGCATTGCAAGCATCTGTT
genomic: CTTCAGAGTCACTTTATGGTGCTTGTGAGTCCATGTATAAGCCAAACATGgttagtttct ... tggtatgaagGAACCCGAAGAACTTTTCGAGACAATCTCGCAAGCATTGCAGGCATCTGTT
EST: gi|89247887|gb|DY619673.1|DY619673
EST:     CTTCAGAGTCACTTTATGGTGCTTGTGAGTCCATGTATAAGCCAAACATG                         GAACCCGAAGAACTTTTCGAGACAATCTCGCAAGCATTGCAGGCATCTGTT
genomic: CTTCAGAGTCACTTTATGGTGCTTGTGAGTCCATGTATAAGCCAAACATGgttagtttct ... tggtatgaagGAACCCGAAGAACTTTTCGAGACAATCTCGCAAGCATTGCAGGCATCTGTT
EST: gi|32845419|gb|CD985100.1|CD985100
EST:     CTTCAGAGTCACTTTATGGTGCTTGTGAGTCCATGTATAAGCCAAACATG                         GAACCCGAAGAACTTTTCGAGACAATCTCGCAAGCATTGCAAGCATCTGTT
genomic: CTTCAGAGTCACTTTATGGTGCTTGTGAGTCCATGTATAAGCCAAACATGgttagtttct ... tggtatgaagGAACCCGAAGAACTTTTCGAGACAATCTCGCAAGCATTGCAGGCATCTGTT
EST: gi|211263410|gb|FL474910.1|FL474910
EST:     CTTCAGAGTCACTTTATGGTGCTTGTGAGTCCATGTATAAGCCAAACATG                         GAACCCGAAGAACTTTTCGAGACAATCTCGCAAGCATTGCAAGCATCTGTT
genomic: CTTCAGAGTCACTTTATGGTGCTTGTGAGTCCATGTATAAGCCAAACATGgttagtttct ... tggtatgaagGAACCCGAAGAACTTTTCGAGACAATCTCGCAAGCATTGCAGGCATCTGTT
EST: gi|60337320|gb|DN204293.1|DN204293
EST:     CTTCAGAGTCACTTTATGGTGCTTGTGAGTCCATGTATAAGCCAAACATG                         GAACCCGAAGAACTTTTCGAGACAATCTCGCAAGCATTGCAGGCATCTGTT
genomic: CTTCAGAGTCACTTTATGGTGCTTGTGAGTCCATGTATAAGCCAAACATGgttagtttct ... tggtatgaagGAACCCGAAGAACTTTTCGAGACAATCTCGCAAGCATTGCAGGCATCTGTT
EST: gi|88758273|gb|DY542414.1|DY542414
EST:     CTTCAGAGTCACTTTATGGTGCTTGTGAGTCCATGTATAAGCCAAACATG                         GAACCCGAAGAACTTTTCGAGACAATCTCGCAAGCATTGCAGGCATCTGTT
genomic: CTTCAGAGTCACTTTATGGTGCTTGTGAGTCCATGTATAAGCCAAACATGgttagtttct ... tggtatgaagGAACCCGAAGAACTTTTCGAGACAATCTCGCAAGCATTGCAGGCATCTGTT