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CAAGGAACTTCTTCATTTATGTCCAAGATTACAATGAAGCTGATCCAAGGACACATCAAGGATTGGACCTTACTAGGGTGACAACTAGAGAACTTATAGCgttagtacctctcagcttgttgcattatactcattccattgctagttttgtccaccacgcccctggcatatacaaaaaaaaagaacaatatacttgtaaa...
species | Zea mays |
transcript | GRMZM2G117507_T01 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: ACACATCAAGGATTGGACCTTACTAGGGTGACCACTAGAGAACTTATAGC AAAATATGGTTTAAGTGATGATACAGTGGAATTCGEST: gi|211472428|gb|FL096498.1|FL096498
genomic: ACACATCAAGGATTGGACCTTACTAGGGTGACAACTAGAGAACTTATAGCgttagtacct ... tgtatttcagAAAATATGGTTTAAGTGATGATACAGTGGATTTCG
EST: ACATCGAGGGATTGGACCTTACTAGGGTGACCACTAGAAAAACTTATAGC AAAATATGGGTTTAAGEST: gi|24773895|gb|CA409149.1|CA409149
genomic: ACATCAAGG-ATTGGACCTTACTAGGGTGACAACTAGAGAA-CTTATAGCgttagtacct ... tgtatttcagAAAATATGG-TTTAAG
EST: ACACATCAAGGATTGGACCTTACTAGGGTGACAACTAGAGAACTTATAGC AAAATATGGTTTAAGTGATGATACAGTGGATTTCGTTGGACATGCACTTGCEST: gi|33095042|gb|CF055036.1|CF055036
genomic: ACACATCAAGGATTGGACCTTACTAGGGTGACAACTAGAGAACTTATAGCgttagtacct ... tgtatttcagAAAATATGGTTTAAGTGATGATACAGTGGATTTCGTTGGACATGCACTTGC
EST: ACACGTCAAGGATTGGACCTTACTAGGGTGACAACTAGAGAACTTATAGC AAAATATGGTTTAAGTGATGATACAGTGGATTTCGTTGGACATGCACTTGCEST: gi|23357699|gb|BU645348.1|BU645348
genomic: ACACATCAAGGATTGGACCTTACTAGGGTGACAACTAGAGAACTTATAGCgttagtacct ... tgtatttcagAAAATATGGTTTAAGTGATGATACAGTGGATTTCGTTGGACATGCACTTGC
EST: ACACATCAAGGATTGGACCTTACTAGGGTGACAACTAGAGAACTTATAGC AAAATATGGTTTAAGTGATGATACAGTGGATTTCGTTGGACATGCACTTGCEST: gi|33101772|gb|CF061732.1|CF061732
genomic: ACACATCAAGGATTGGACCTTACTAGGGTGACAACTAGAGAACTTATAGCgttagtacct ... tgtatttcagAAAATATGGTTTAAGTGATGATACAGTGGATTTCGTTGGACATGCACTTGC
EST: ACACATCAGGGATTGGACCTCACTAGGGTGACAACTAGAGAACTTATAGC AAAATATGGTTTAAGTGATGATACAGTGGATTTCGTTGGACATGCACTTGCEST: gi|211474946|gb|FL096509.1|FL096509
genomic: ACACATCAAGGATTGGACCTTACTAGGGTGACAACTAGAGAACTTATAGCgttagtacct ... tgtatttcagAAAATATGGTTTAAGTGATGATACAGTGGATTTCGTTGGACATGCACTTGC
EST: ACACATCAAGGATTGGACCTTACTAGGGTGACAACTAGAGAACT-ATAGC AAAATATGGTT-AANGTGATGATACAGTGGGATTTCGT-GGACATGCACEST: gi|60396978|gb|DN229797.1|DN229797
genomic: ACACATCAAGGATTGGACCTTACTAGGGTGACAACTAGAGAACTTATAGCgttagtacct ... tgtatttcagAAAATATGGTTTAA-GTGATGATACAGTGG-ATTTCGTTGGACATGCAC
EST: ACACATCAAGGATTGGACCTTACTAGGGTGACAACTAGAGAACTTATAGC AAAATATGGTTTAAGTGATGATACAGTGGATTTCGTTGGACATGCACTTGCEST: gi|18661117|gb|BM501220.1|BM501220
genomic: ACACATCAAGGATTGGACCTTACTAGGGTGACAACTAGAGAACTTATAGCgttagtacct ... tgtatttcagAAAATATGGTTTAAGTGATGATACAGTGGATTTCGTTGGACATGCACTTGC
EST: ACACATCAAGGATTGGACCTTACTAGGGTGACAACTAGAGAACTTATAGC AAAATATGGTTTAAGTGATGATACAGTGGATTTCGTTGGACATGCACTTGCEST: gi|29544525|gb|CB604905.1|CB604905
genomic: ACACATCAAGGATTGGACCTTACTAGGGTGACAACTAGAGAACTTATAGCgttagtacct ... tgtatttcagAAAATATGGTTTAAGTGATGATACAGTGGATTTCGTTGGACATGCACTTGC
EST: ACACATCAAGGATTGGACCTTACTAGGGTGACAACTAGAGAACTTATAGC AAAATATGGTTTAAGTGATGATACAGTGGATTTCGTTGGACATGCACTTGCEST: gi|31351669|gb|CD436026.1|CD436026
genomic: ACACATCAAGGATTGGACCTTACTAGGGTGACAACTAGAGAACTTATAGCgttagtacct ... tgtatttcagAAAATATGGTTTAAGTGATGATACAGTGGATTTCGTTGGACATGCACTTGC
EST: ACACATCAAGGATTGGACCTTACTAGGGTGACAACTAGAGAACTTATAGC AAAATATGGTTTAAGTGATGATACAGTGGATTTCGTTGGACATGCACTTGCEST: gi|32943016|gb|CF047835.1|CF047835
genomic: ACACATCAAGGATTGGACCTTACTAGGGTGACAACTAGAGAACTTATAGCgttagtacct ... tgtatttcagAAAATATGGTTTAAGTGATGATACAGTGGATTTCGTTGGACATGCACTTGC
EST: ACACATCAAGGATTGGACCTTACTAGGGTGACAACTAGAGAACTTATAGC AAAATATGGTTTAAGTGATGATACAGTGGATTTCGTTGGACATGCACTTGCEST: gi|32933017|gb|CF037829.1|CF037829
genomic: ACACATCAAGGATTGGACCTTACTAGGGTGACAACTAGAGAACTTATAGCgttagtacct ... tgtatttcagAAAATATGGTTTAAGTGATGATACAGTGGATTTCGTTGGACATGCACTTGC
EST: ACACATCAAGGATTGGACCTTACTAGGGTGACAACTAGAGAACTTATAGC AAAATATGGTTTAAGTGATGATACAGTGGATTTCGTTGGACATGCACTTGCEST: gi|6020721|gb|AW065529.1|AW065529
genomic: ACACATCAAGGATTGGACCTTACTAGGGTGACAACTAGAGAACTTATAGCgttagtacct ... tgtatttcagAAAATATGGTTTAAGTGATGATACAGTGGATTTCGTTGGACATGCACTTGC
EST: ACACATCAAGGATTGGACCTTACTAGGGTGACAACTAGAGAACTTATAGC AAAATATGGTTTAAGTGATGATACAGNGGATTTCGNTGGACATGCACTTGCEST: gi|31360108|gb|CD444465.1|CD444465
genomic: ACACATCAAGGATTGGACCTTACTAGGGTGACAACTAGAGAACTTATAGCgttagtacct ... tgtatttcagAAAATATGGTTTAAGTGATGATACAGTGGATTTCGTTGGACATGCACTTGC
EST: ACACATCAAGGATTGGACCTTACTAGGGTGACAACTAGAGAACTTATAGC AAAATATGGTTTAAGTGATGATACAGTGGATTTCGTTGGACATGCACTTGCEST: gi|211472426|gb|FL096496.1|FL096496
genomic: ACACATCAAGGATTGGACCTTACTAGGGTGACAACTAGAGAACTTATAGCgttagtacct ... tgtatttcagAAAATATGGTTTAAGTGATGATACAGTGGATTTCGTTGGACATGCACTTGC
EST: ACACATCAAGGATTGGACCTTACTAGGGTGACAACTAGAGAACTTATAGC AAAATATGGTTTAAGTGATGATANCAGTGGATTTCGTTGGACATGCACTTGEST: gi|15313508|gb|BI478735.1|BI478735
genomic: ACACATCAAGGATTGGACCTTACTAGGGTGACAACTAGAGAACTTATAGCgttagtacct ... tgtatttcagAAAATATGGTTTAAGTGATGATA-CAGTGGATTTCGTTGGACATGCACTTG
EST: ACACATCAAGGA-TGGACCTTACTAGGGTGACAACTAGAGAACTTATAGC AAAATATGGTTTAAGTGATGATACAGTGGATTTCGTTGGACATGCACTTGCEST: gi|5895558|gb|AW036804.1|AW036804
genomic: ACACATCAAGGATTGGACCTTACTAGGGTGACAACTAGAGAACTTATAGCgttagtacct ... tgtatttcagAAAATATGGTTTAAGTGATGATACAGTGGATTTCGTTGGACATGCACTTGC
EST: CAAGGATTGGACCTTACTAGGGTGACAACTAGAGAACTTATAGC AAAATATGGTTTAAGTGATGATACAGTGGATTTCGTTGGACATGCACTTGCEST: gi|211113229|gb|FL096514.1|FL096514
genomic: CAAGGATTGGACCTTACTAGGGTGACAACTAGAGAACTTATAGCgttagtacct ... tgtatttcagAAAATATGGTTTAAGTGATGATACAGTGGATTTCGTTGGACATGCACTTGC
EST: ACACATCAAGGATTGGACCTTACTAGGGTGACAACTAGAGAACTTATAGC AAAATATGGTTTAAGTGATGATACAGTGGEST: gi|24773363|gb|CA408617.1|CA408617
genomic: ACACATCAAGGATTGGACCTTACTAGGGTGACAACTAGAGAACTTATAGCgttagtacct ... tgtatttcagAAAATATGGTTTAAGTGATGATACAGTGG
EST: ACACATCAAGGATTGGACCTTACTAGGGTGACAACTAGAGAACTTATAGC AAAATATGGTTTAAGTGATGATACAGTGGATTTCGTTGGACATGCACTTGC
genomic: ACACATCAAGGATTGGACCTTACTAGGGTGACAACTAGAGAACTTATAGCgttagtacct ... tgtatttcagAAAATATGGTTTAAGTGATGATACAGTGGATTTCGTTGGACATGCACTTGC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CAAGGAACTTCTTCATTTATGTCCAAGATTACAATGAAGCTGATCCAAGGACACATCAAGGATTGGACCTTACTAGGGTGACAACTAGAGAACTTATAGCgttagtacctctcagcttgttgcattatactcattccattgctagttttgtccaccacgcccctggcatatacaaaaaaaaagaacaatatacttgtaaa
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