1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
GAAAGGTTCGTGCAATCTTGGGAGGACGGATTCGCTTTATTCTTGCAGGTGGAGCACCTCTGTCAGGGGAAACACAGAGATTTATCAATATATGTCTTGGgtgagattcaagttttctttttttcattgacattctcaatttgtgttaaacgccaattgcatctgttgtccactttttgtttcacaaatttggattcaaacattcgaatgaatagtttgcagggatcaaaacaattgtttcattttacttacagtgcagaaattgatagtgtgatttgtgttattgcag
species | Zea mays |
transcript | GRMZM2G117064_T01 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: GGAGCACCTCTGTCAGGGGAAACACAGAGATTTATCAATATATGTCTTGG GGCTCCAATATCTCAAGGATATGGCTTGACTGAAACCTGTGCTGGTGGGACEST: gi|32930660|gb|CF035472.1|CF035472
genomic: GGAGCACCTCTGTCAGGGGAAACACAGAGATTTATCAATATATGTCTTGGgtgagattca ... gttattgcagGGCTCCAATATCTCAAGGATATGGCTTGACTGAAACCTGTGCTGGTGGGAC
EST: GGAGCACCTCTGTCAGGGGAAACACAGAGATTTATCAATATATGTCTTGG GGCTCCAATATCTCAAGGATATGGCTTGACTGAAACCTGTGCTGGTGGGACEST: gi|32933243|gb|CF038055.1|CF038055
genomic: GGAGCACCTCTGTCAGGGGAAACACAGAGATTTATCAATATATGTCTTGGgtgagattca ... gttattgcagGGCTCCAATATCTCAAGGATATGGCTTGACTGAAACCTGTGCTGGTGGGAC
EST: GGAGCACCTCTGTCAGGGGAAACACAGAGATTTATCAATATATGTCTTGG GGCTCCAATATCTCAAGGATATGGCTTGACTGAAACCTGTGCTGGTGGGACEST: gi|32931629|gb|CF036441.1|CF036441
genomic: GGAGCACCTCTGTCAGGGGAAACACAGAGATTTATCAATATATGTCTTGGgtgagattca ... gttattgcagGGCTCCAATATCTCAAGGATATGGCTTGACTGAAACCTGTGCTGGTGGGAC
EST: GGAGCACCTCTGTCAGGGGAAACACAGAGATTTATCAATATATGTCTTGG GGCTCCAATATCTCAAGGATATGGCTTGACTGAAACCTGTGCTGGTGGGAC
genomic: GGAGCACCTCTGTCAGGGGAAACACAGAGATTTATCAATATATGTCTTGGgtgagattca ... gttattgcagGGCTCCAATATCTCAAGGATATGGCTTGACTGAAACCTGTGCTGGTGGGAC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GAAAGGTTCGTGCAATCTTGGGAGGACGGATTCGCTTTATTCTTGCAGGTGGAGCACCTCTGTCAGGGGAAACACAGAGATTTATCAATATATGTCTTGGgtgagattcaagttttctttttttcattgacattctcaatttgtgttaaacgccaattgcatctgttgtccactttttgtttcacaaatttggattcaaacattcgaatgaatagtttgcagggatcaaaacaattgtttcattttacttacagtgcagaaattgatagtgtgatttgtgttattgcag
- - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA