1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
ACCAAAGCTGACCGTGCACTTCTTTCATCGTTCCCTCTTGCAGACCATCGCTCTGATCGCCGTCAGAGAAGGCGTCGTGCAGCTTGGCTCCATGAAGAAGgtacaccccgccgacactgttctacgcccactccactcagccactgcactgcagctagcgtgacttggtggtgcgtgcatgcatgatttctcgcctcgcg...
species | Zea mays |
transcript | GRMZM2G116185_T03 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: CTCTGATCGCCGTCAGAGAAGGCGTCGTGCAGCTTGGCTCCATGAAGAAG GTGGCGGAGGACCTGAGCTACGTGGTGATGCTGCGCCGGAAGTTCGGCTACEST: gi|50336651|gb|CO531777.1|CO531777
genomic: CTCTGATCGCCGTCAGAGAAGGCGTCGTGCAGCTTGGCTCCATGAAGAAGgtacaccccg ... gcgcgcgcagGTGGCGGAGGACCTGAGCTACGTGGTGATGCTGCGCCGGAAGTTCGGCTAC
EST: CTCTGATCGCCGTCAGAGAAGGCGTCGTGCAGCTTGGCTCCATGAAGAAG GTGGCGGAGGACCTGAGCTACGTGGTGATGCTGCGCCGGAAGTTCGGCTACEST: gi|9732759|gb|BE511511.1|BE511511
genomic: CTCTGATCGCCGTCAGAGAAGGCGTCGTGCAGCTTGGCTCCATGAAGAAGgtacaccccg ... gcgcgcgcagGTGGCGGAGGACCTGAGCTACGTGGTGATGCTGCGCCGGAAGTTCGGCTAC
EST: AGGCGTCGTGCAGCTTGGCTCCATGAAGAAG GTGGCGGAGGACCTGAGCTACGTGGTGATGCTGCGCCGGAAGTTCGGCTAC
genomic: AGGCGTCGTGCAGCTTGGCTCCATGAAGAAGgtacaccccg ... gcgcgcgcagGTGGCGGAGGACCTGAGCTACGTGGTGATGCTGCGCCGGAAGTTCGGCTAC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ACCAAAGCTGACCGTGCACTTCTTTCATCGTTCCCTCTTGCAGACCATCGCTCTGATCGCCGTCAGAGAAGGCGTCGTGCAGCTTGGCTCCATGAAGAAGgtacaccccgccgacactgttctacgcccactccactcagccactgcactgcagctagcgtgacttggtggtgcgtgcatgcatgatttctcgcctcgcg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG