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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GATCAGGGTCTCCTGGGAATGTGCGTTGGTGAAAAGCGGAAGTTGAAGATCCCATCAAAGCTTGGCTATGGGCCTCAAGGCTCGCCACCTACTATTCCTGgtatgttttttatatatattttctgctctttgtcttttgagcatacagttgcgatagtcacatttggattattcaaaacactctgtgagggtaatcatca...

Basic information

species Zea mays
transcript GRMZM2G115757_T02
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G115757_T02 (Zea mays), 5'ss of exon 5
lower sequence: LOC_Os09g32526.2 (Oryza sativa), 5'ss of exon 4
GATCAGGGTCTCCTGGGAATGTGCGTTGGTGAAAAGCGGAAGTTGAAGATCCCATCAAAGCTTGGCTATGGGCCTCAAGGCTCGCCACCTACTATTCCTGgtatgttttttatatatattttctgctctttgtcttttgagc-atacagttgcgatagtcacatttggattattcaaaacactctgtgagggtaatcatca-
||||||||  | ||||| ||||||||||| || ||| ||||| |||||||||| |||||||| || |||||  ||||||| || || || || || ||||||||||  ||| | ||  | || |    |  || | |   ||  |  ||||   || || ||||     | |    ||    | | | |    |||  |   
GATCAGGGCATTCTGGGCATGTGCGTTGGCGAGAAGAGGAAGCTGAAGATCCCTTCAAAGCTCGGTTATGGTGCTCAAGGGTCACCGCCGACCATCCCTGgtatgtcgttt-tgtagttcttgtctcttgagtttatgccgctgtcaagttagaatggt-acatccttttcaagagaagttgtgtataataaaaatagttta

upper sequence: GRMZM2G115757_T02 (Zea mays), 5'ss of exon 5
lower sequence: GLYMA16G10750.1 (Glycine max), 5'ss of exon 5
GATCAGGGTCTCCTGGGAATGTGCGTTGGTGAAAAGCGGAAGTTGAAGATCCCATCAAAGCTTGGCTATGGGCCTCAAGGCTCGCCACCTACTATTCCTGgtatgttttttatatatattttc-tgctctttgtcttttgagcatacagttgcgatagtcacatttggattattcaaaacactctgtgagggtaatcatca
|| |||||  |  ||||||||||  ||||||| ||||| ||| |||| || |||||||| |||||||||||    || || || ||||| |||||||| ||||  ||| |||| |  ||  |  |  |  |  |||    ||||| || |   | |||| | ||||   || |    |||   | |    |     | |  
GACCAGGGATTATTGGGAATGTGTCTTGGTGAGAAGCGTAAGCTGAAAATACCATCAAAACTTGGCTATGGAGAGCAGGGTTCCCCACCCACTATTCCAGgta-atttattatgttgataatggtagtaatgctctacccagcattcattctagttagtaaaatttatgttttcatgaaccaccagattagtctcccgtgt
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|32936362|gb|CF041181.1|CF041181
EST:     CCCATCAAAGCTTGGCTATGGGCCTCAAGGCTCGCCACCTACTATTCCTG                         GTGGAGCAACCCTCATATTTGACACGGAGCTTGTCGCTGTCAATGGAGAAC
genomic: CCCATCAAAGCTTGGCTATGGGCCTCAAGGCTCGCCACCTACTATTCCTGgtatgttttt ... cttcttgcagGTGGAGCAACCCTCATATTTGACACGGAGCTTGTCGCTGTCAATGGAGAAC
EST: gi|211211874|gb|FL151949.1|FL151949
EST:     CCCATCAAAGCTTGGCTATGGGCCTCAAGGCTCGCCACCTACTATTCCTG                         GTGGAGCAACCCTCATATTTGACACGGAGCTTGTCGCTGTCAATGGAGAAC
genomic: CCCATCAAAGCTTGGCTATGGGCCTCAAGGCTCGCCACCTACTATTCCTGgtatgttttt ... cttcttgcagGTGGAGCAACCCTCATATTTGACACGGAGCTTGTCGCTGTCAATGGAGAAC
EST: gi|213167545|gb|FM181750.1|FM181750
EST:     CCATCAAANNNNTGGCTATGGGCCTCAAGGCTCGCCACCTACTATTCCTG                         GTGGAGCAACCCTCATATTTGACACGGAGCTTGTCGCTGTCAATGGAGAAC
genomic: CCATCAAA-GCTTGGCTATGGGCCTCAAGGCTCGCCACCTACTATTCCTGgtatgttttt ... cttcttgcagGTGGAGCAACCCTCATATTTGACACGGAGCTTGTCGCTGTCAATGGAGAAC
EST: gi|211214433|gb|FL151952.1|FL151952
EST:     CCCATCAAAGCTTGGCTATGGGCCTCAAGGCTCGCCACCTACTATTCCTG                         GTGGAGCAACCCTCATATTTGACACGGAGCTTGTCGCTGTCAATGGAGAAC
genomic: CCCATCAAAGCTTGGCTATGGGCCTCAAGGCTCGCCACCTACTATTCCTGgtatgttttt ... cttcttgcagGTGGAGCAACCCTCATATTTGACACGGAGCTTGTCGCTGTCAATGGAGAAC
EST: gi|32932853|gb|CF037665.1|CF037665
EST:     CCCATCAAAGCTTGGCTATGGGCCTCAAGGCTCGCCACCTACTATTCCTG                         GTGGAGCAACCCTCATATTTGACACGGAGCTTGTCGCTGTCAATGGAGAAC
genomic: CCCATCAAAGCTTGGCTATGGGCCTCAAGGCTCGCCACCTACTATTCCTGgtatgttttt ... cttcttgcagGTGGAGCAACCCTCATATTTGACACGGAGCTTGTCGCTGTCAATGGAGAAC
EST: gi|211214432|gb|FL151951.1|FL151951
EST:     CCCATCAAAGCTTGGCTATGGGCCTCAAGGCTCGCCACCTACTATTCCTG                         GTGGAGCAACCCTCATATTTGACACGGAGCTTGTCGCTGTCAATGGAGAAC
genomic: CCCATCAAAGCTTGGCTATGGGCCTCAAGGCTCGCCACCTACTATTCCTGgtatgttttt ... cttcttgcagGTGGAGCAACCCTCATATTTGACACGGAGCTTGTCGCTGTCAATGGAGAAC
EST: gi|32909171|gb|CF013983.1|CF013983
EST:     CCCATCAAAGCTTGGCTATGGGCCTCAAGGCTCGCCACCTACTATTCCTG                         GTGGAGCAACCCTCATATTTGACACGGAGCTTGTCGCTGTCAATGGAGAAC
genomic: CCCATCAAAGCTTGGCTATGGGCCTCAAGGCTCGCCACCTACTATTCCTGgtatgttttt ... cttcttgcagGTGGAGCAACCCTCATATTTGACACGGAGCTTGTCGCTGTCAATGGAGAAC
EST: gi|32933739|gb|CF038551.1|CF038551
EST:     CCCATCAAAGCTTGGCTATGGGCCTCAAGGCTCGCCACCTACTATTCCTG                         GTGGAGCAACCCTCATATTTGACACGGAGCTTGTCGCTGTCAATGGAGAAC
genomic: CCCATCAAAGCTTGGCTATGGGCCTCAAGGCTCGCCACCTACTATTCCTGgtatgttttt ... cttcttgcagGTGGAGCAACCCTCATATTTGACACGGAGCTTGTCGCTGTCAATGGAGAAC
EST: gi|37388080|gb|CF631245.1|CF631245
EST:     CCCATCAAAGCTTGGCTATGGGCCTCAAGGCTCGCCACCTACTATTCCTG                         GTGGAGCAACCCTCATATTTGACACGGAGCTTGTCGCTGTCAATGGAGAAC
genomic: CCCATCAAAGCTTGGCTATGGGCCTCAAGGCTCGCCACCTACTATTCCTGgtatgttttt ... cttcttgcagGTGGAGCAACCCTCATATTTGACACGGAGCTTGTCGCTGTCAATGGAGAAC
EST: gi|32828559|gb|CD968237.1|CD968237
EST:     CTTGGCTATGGGCCTCAAGGCTCGCCACCTACTATTCCTG                         GTGGAGCAACCCTCATATTTGACACGGAGCTTGTCGCTGTCAATGGAGAAC
genomic: CTTGGCTATGGGCCTCAAGGCTCGCCACCTACTATTCCTGgtatgttttt ... cttcttgcagGTGGAGCAACCCTCATATTTGACACGGAGCTTGTCGCTGTCAATGGAGAAC
EST: gi|12968665|gb|BG265611.1|BG265611
EST:     CCCATCAAAGCTTGGCTATGGGCCTCAAGGCTCGCCCCCTACTATTCCTG                         GTGGAGCAACCCTCATATTTGACACGGAGCTTGTCGCTGTCAATGGAGAAC
genomic: CCCATCAAAGCTTGGCTATGGGCCTCAAGGCTCGCCACCTACTATTCCTGgtatgttttt ... cttcttgcagGTGGAGCAACCCTCATATTTGACACGGAGCTTGTCGCTGTCAATGGAGAAC
EST: gi|211343044|gb|FL472494.1|FL472494
EST:     CCCATCAAAGCTTGGCTATGGGCCTCAAGGCTCGCCACCTACTATTCCTG                         GTGGAGCAACCCTCATATTTGACACGGAGCTTGTCGCTGTCAATGGAGAAC
genomic: CCCATCAAAGCTTGGCTATGGGCCTCAAGGCTCGCCACCTACTATTCCTGgtatgttttt ... cttcttgcagGTGGAGCAACCCTCATATTTGACACGGAGCTTGTCGCTGTCAATGGAGAAC
EST: gi|32795582|gb|CD947818.1|CD947818
EST:     CCCATCAAAGCTTGGCTATGGGCCTCAAGGCTCGCCACCTACTATTCCTG                         GTGGAGCAACCCTCATATTTGACACGGAGCTTGTCGCTGTCAATGGAGAAC
genomic: CCCATCAAAGCTTGGCTATGGGCCTCAAGGCTCGCCACCTACTATTCCTGgtatgttttt ... cttcttgcagGTGGAGCAACCCTCATATTTGACACGGAGCTTGTCGCTGTCAATGGAGAAC
EST: gi|211343045|gb|FL472495.1|FL472495
EST:     CCCATCAAAGCTTGGCTATGGGCCTCAAGGCTCGCCACCTACTATTCCTG                         GTGGAGCAACCCTCATATTTGACACGGAGCTTGTCGCTGTCAATGGAGAAC
genomic: CCCATCAAAGCTTGGCTATGGGCCTCAAGGCTCGCCACCTACTATTCCTGgtatgttttt ... cttcttgcagGTGGAGCAACCCTCATATTTGACACGGAGCTTGTCGCTGTCAATGGAGAAC
EST: gi|33104467|gb|CF064427.1|CF064427
EST:     CCCATCAAAGCTTGGCTATGGGCCTCAAGGCTCGCCACCTACTATTCCTG                         GTGGAGCAACCCTCATATTTGACACGGAGCTTGTCGCTGTCAATGGAGAAC
genomic: CCCATCAAAGCTTGGCTATGGGCCTCAAGGCTCGCCACCTACTATTCCTGgtatgttttt ... cttcttgcagGTGGAGCAACCCTCATATTTGACACGGAGCTTGTCGCTGTCAATGGAGAAC
EST: gi|6227228|gb|AW155827.1|AW155827
EST:     CCCATCAAAGCTTGGCTATGGGCCTCAAGGCTCGCCACCTACTATTCCTG                         GTGGAGCAACCCTCATATTTGACACGGAGCTTGTCGCTGTCAATGGAGAAC
genomic: CCCATCAAAGCTTGGCTATGGGCCTCAAGGCTCGCCACCTACTATTCCTGgtatgttttt ... cttcttgcagGTGGAGCAACCCTCATATTTGACACGGAGCTTGTCGCTGTCAATGGAGAAC
EST: gi|32794914|gb|CD947150.1|CD947150
EST:     CCCATCAAAGCTTGGCTATGGGCCTCAAGGCTCGCCACCTACTATTCCTG                         GTGGAGCAACCCTCATATTTGACACGGAGCTTGTCGCTGTCAATGGAGAAC
genomic: CCCATCAAAGCTTGGCTATGGGCCTCAAGGCTCGCCACCTACTATTCCTGgtatgttttt ... cttcttgcagGTGGAGCAACCCTCATATTTGACACGGAGCTTGTCGCTGTCAATGGAGAAC
EST: gi|5361127|gb|AI795742.1|AI795742
EST:     CCCATCAAAGCTTGGCTATGGGCCTCAAGGCTCGCCACCTACTATTCCTG                         GTGGAGCAACCCTCATATTTGACACGGAGCTTGTCGCTGTCAATGGAGAAC
genomic: CCCATCAAAGCTTGGCTATGGGCCTCAAGGCTCGCCACCTACTATTCCTGgtatgttttt ... cttcttgcagGTGGAGCAACCCTCATATTTGACACGGAGCTTGTCGCTGTCAATGGAGAAC
EST: gi|5762183|gb|AI967231.1|AI967231
EST:     CCCATCAAAGCTTGGCTATGGGCCTAAAGGCTCGCCACCTACTATTCCTG                         GTGGAGCAACCCTCATATTTGACACGGAGCTTGTCGCTGTCAATGGAGAAC
genomic: CCCATCAAAGCTTGGCTATGGGCCTCAAGGCTCGCCACCTACTATTCCTGgtatgttttt ... cttcttgcagGTGGAGCAACCCTCATATTTGACACGGAGCTTGTCGCTGTCAATGGAGAAC