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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGAATATACTTTGTACGGGAAGCCAAACATTACAGAAATGTTGAGAGGACTTGCGTTCCAGATATCTGCCAACTCCTTTTTTCAGACTAATACAAAACAGgtttgtttttgttgaatgatgaatggagattttattgcatttttgttttgaccactgcacccttccatcatggtgtttctctccaactccaatcatcctg...

Basic information

species Zea mays
transcript GRMZM2G115198_T02
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G115198_T02 (Zea mays), 5'ss of exon 5
lower sequence: LOC_Os01g09750.1 (Oryza sativa), 5'ss of exon 5
AGAATATACTTTGTACGGGAAGCCAAACATTACAGAAATGTTGAGAGGACTTGCGTTCCAGATATCTGCCAACTCCTTTTTTCAGACTAATACAAAACAGgtttgtttttgttgaatgatgaatggagattttattgcatttttgttttgaccactgcaccct--tccatcatggtgtttctctccaactc---caatcatcctg---------------------------------------------------------
||||||||| ||||| ||||| |||| ||||||||| ||||||||||||||| | |||||||||||||||||||||||||| |||||||||||||||||||||||||  || |   | | |  | ||  | ||     || | |||  ||     | ||  |   | |||  |     || | ||||  |    | |  ||  ||                                                         
AGAATATACCTTGTATGGGAAACCAACCATTACAGAGATGTTGAGAGGACTTACATTCCAGATATCTGCCAACTCCTTTTTCCAGACTAATACAAAACAGgtttgttaatgctctgtta-ggttcgaagtattgacatatctatgtcatgtgacttacattccagttcat-gtatcagttatttccacgttatgctaaaattttggtgtctagtgcttgagcatttccaacagtttttcctgcatggttgcatgtactgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|32916675|gb|CF021487.1|CF021487
EST:     TTGCGTTCCAGATATCTGCCAACTCCTTTTTTCAGACTAATACAAAACAG                         GCTGATGTTCTTTACAAGCTTATTGAAGATTCTGCTGGGCTTAAAGGAGAT
genomic: TTGCGTTCCAGATATCTGCCAACTCCTTTTTTCAGACTAATACAAAACAGgtttgttttt ... cttcttgcagGCTGATGTTCTTTACAAGCTTATTGAAGATTCTGCTGGGCTTAAAGGAGAT
EST: gi|148945132|gb|EC890330.2|EC890330
EST:     AGATATCTGCCAACTCCTTTTTTCAGATTAATACAAAACAG                         GCGGATGTTCTTTACAAGCTTATTGAAGATTCTGCTGGGGTTAAAGGAGAG
genomic: AGATATCTGCCAACTCCTTTTTTCAGACTAATACAAAACAGgtttgttttt ... cttcttgcagGCTGATGTTCTTTACAAGCTTATTGAAGATTCTGCTGGGCTTAAAGGAGAT
EST: gi|78109730|gb|DV528146.1|DV528146
EST:     TTGCGTTCCAGATATCTGCCAACTCCTTTTTTCAGACTAATACAAAACAG                         GCTGATGTTCTTTACAAGCTTATTGAAGATTCTGCTGGGCTTAAAGGAGAT
genomic: TTGCGTTCCAGATATCTGCCAACTCCTTTTTTCAGACTAATACAAAACAGgtttgttttt ... cttcttgcagGCTGATGTTCTTTACAAGCTTATTGAAGATTCTGCTGGGCTTAAAGGAGAT