Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTGGCGCTGATGCTGCATTTGATACTTCTTCTGGGGACTTAACCAAATACAATGCTGGACTGAGCTACACGACGCCTGACTTTGTTGCTGCAGCGACTTTgtaagtagtctgtcacaatgcttaacagtttctgtttgtaactgttattagtgtcctagggatcacatttgcccttagcaccaatgccatctctagggaa...

Basic information

species Zea mays
transcript GRMZM2G115049_T01
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G115049_T01 (Zea mays), 5'ss of exon 5
lower sequence: LOC_Os05g45950.1 (Oryza sativa), 5'ss of exon 5
TTGGCGCTGATGCTGCATTTGATACTTCTTCTGGGGACTTAACCAAATACAATGCTGGACTGAGCTACACGACGCCTGACTTTGTTGCTGCAGCGACTTTgtaagtagtctgtcacaatgcttaacagtttctgtttgtaactgttattagtgtcctagggatcacatttgcccttagcaccaatgccatctctagggaa
||||  |||||| ||||||||||||| |  |||||||||| ||||| |||||||| ||||||||| |||| || || ||  |   ||| |||  |  | |||||| ||| |    |||| |||    || |       |  ||  |||| ||    | |   |  |  ||  |||       ||  ||  |       ||
TTGGTACTGATGTTGCATTTGATACTGCAACTGGGGACTTCACCAAGTACAATGCGGGACTGAGCCACACTACTCCAGATCTCACTGCAGCACTGCTTCTgtaagcagtttcatccaattctttggtgtattaacacttctctaatattcgtactgttgttttggccctttacctgttgtttaactcctccaagtcccaa
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|60348128|gb|DN215101.1|DN215101
EST:     AATGCTGGACTGAGCTACACTACGCCTGACTTTGTTGCTGCAGCGACTTT                         GAACAACAAAGGAGACAACATTGCCGCTTCCTACTACCACTCGGTGAGTCC
genomic: AATGCTGGACTGAGCTACACGACGCCTGACTTTGTTGCTGCAGCGACTTTgtaagtagtc ... tgcatttcagGAACAACAAAGGAGACAACATTGCCGCTTCCTACTACCACTCGGTGAGTCC
EST: gi|18176253|gb|BM351273.1|BM351273
EST:     AATGCTGGACTGAGCTACACGACGCCTGACTTTGTTGCTGCAGCGACTTT                         GAACAACAAAGGAGACAACATTGCCGCTTCCTACTACCACTCGGTGAGTCC
genomic: AATGCTGGACTGAGCTACACGACGCCTGACTTTGTTGCTGCAGCGACTTTgtaagtagtc ... tgcatttcagGAACAACAAAGGAGACAACATTGCCGCTTCCTACTACCACTCGGTGAGTCC
EST: gi|71760785|gb|DR958722.1|DR958722
EST:     AATGCTGGACTGAGCTACACGACGCCTGACTTTGTTGCTGCAGCGACTTT                         GAACAACAAAGGAGACAACATTGCCGCTTCCTACTACCACTCGGTGAGTCC
genomic: AATGCTGGACTGAGCTACACGACGCCTGACTTTGTTGCTGCAGCGACTTTgtaagtagtc ... tgcatttcagGAACAACAAAGGAGACAACATTGCCGCTTCCTACTACCACTCGGTGAGTCC
EST: gi|211103981|gb|FL459801.1|FL459801
EST:     ACGCCTGACTTTGTTGCTGCAGCGACTTT                         GAACAACAAAGGAGACAACATTGCCGCTTCCTACTACCACTCGGTGAGTCC
genomic: ACGCCTGACTTTGTTGCTGCAGCGACTTTgtaagtagtc ... tgcatttcagGAACAACAAAGGAGACAACATTGCCGCTTCCTACTACCACTCGGTGAGTCC
EST: gi|78073599|gb|DV502033.1|DV502033
EST:     AATGCTGGACTGAGCTACACGACGCCTGACTTTGTTGCTGCAGCGACTTT                         GAACAACAAAGGAGACAACATTGCCGCTTCCTACTACCACTCGGTGAGTCC
genomic: AATGCTGGACTGAGCTACACGACGCCTGACTTTGTTGCTGCAGCGACTTTgtaagtagtc ... tgcatttcagGAACAACAAAGGAGACAACATTGCCGCTTCCTACTACCACTCGGTGAGTCC
EST: gi|32909155|gb|CF013967.1|CF013967
EST:     AATGCTGGACTGAGCTACACGACGCCTGACTTTGTTGCTGCAGCGACTTT                         GAACAACAAAGGAGACAACATTGCCGCTTCCTACTACCACTCGGTGAGTCC
genomic: AATGCTGGACTGAGCTACACGACGCCTGACTTTGTTGCTGCAGCGACTTTgtaagtagtc ... tgcatttcagGAACAACAAAGGAGACAACATTGCCGCTTCCTACTACCACTCGGTGAGTCC
EST: gi|9953753|gb|BE640336.1|BE640336
EST:     AATGCTGGACTGAGCTACACGACGCCTGACTTTGTTGCTGCAGCGACTTT                         GAACAACAAAGGAGACAACATTGCCGCTTCCTACTACCACTCGGTGAGTCC
genomic: AATGCTGGACTGAGCTACACGACGCCTGACTTTGTTGCTGCAGCGACTTTgtaagtagtc ... tgcatttcagGAACAACAAAGGAGACAACATTGCCGCTTCCTACTACCACTCGGTGAGTCC
EST: gi|60349522|gb|DN216495.1|DN216495
EST:     AATGCTGGACTGAGCTACACTACGCCTGACTTTGTTGCTGCAGCGACTTT                         GAACAACAAAGGAGACAACATTGCCGCTTCCTACTACCACTCGGTGAGTCC
genomic: AATGCTGGACTGAGCTACACGACGCCTGACTTTGTTGCTGCAGCGACTTTgtaagtagtc ... tgcatttcagGAACAACAAAGGAGACAACATTGCCGCTTCCTACTACCACTCGGTGAGTCC
EST: gi|149083876|gb|EE173252.2|EE173252
EST:     AATGCTGGACTGAGCTACACGACGCCTGACTTTGTTGCTGCAGCGACTTT                         T
genomic: AATGCTGGACTGAGCTACACGACGCCTGACTTTGTTGCTGCAGCGACTTTgtaagtagtc ... tgcatttcag-
EST: gi|149083876|gb|EE173252.2|EE173252
EST:     AATGCTGGACTGAGCTACACGACGCCTGACTTTGTTGCTGCAGCGACTTT                         T
genomic: AATGCTGGACTGAGCTACACGACGCCTGACTTTGTTGCTGCAGCGACTTTgtaagtagtc ... tgcatttcag-
EST: gi|71309600|gb|DR791078.1|DR791078
EST:     AATGCTGGACTGAGCTACACGACGCCTGACTTTGTTGCTGCAGCGACTTT                         GAACAACAAAGGAGACAACATTGCCGCTTCCTACTACCACTCGGTGAGTCC
genomic: AATGCTGGACTGAGCTACACGACGCCTGACTTTGTTGCTGCAGCGACTTTgtaagtagtc ... tgcatttcagGAACAACAAAGGAGACAACATTGCCGCTTCCTACTACCACTCGGTGAGTCC
EST: gi|101387379|gb|EB815705.1|EB815705
EST:     AATGCTGGACTGAGCTACACGACGCCTGACTTTGTTGCTGCAGCGACTTT                         GAACAACAAAGGAGACAACATTGCCGCTTCCTACTACCACTCGGTGAGTCC
genomic: AATGCTGGACTGAGCTACACGACGCCTGACTTTGTTGCTGCAGCGACTTTgtaagtagtc ... tgcatttcagGAACAACAAAGGAGACAACATTGCCGCTTCCTACTACCACTCGGTGAGTCC
EST: gi|67016199|gb|CO444948.1|CO444948
EST:     AATGCTGGACTGAGCTACACGACGCCTGACTTTGTTGCTGCAGCGACTTT                         GAACAACAAAGGAGACAACATTGCCGCTTCCTACTACCACTCGGTGAGTCC
genomic: AATGCTGGACTGAGCTACACGACGCCTGACTTTGTTGCTGCAGCGACTTTgtaagtagtc ... tgcatttcagGAACAACAAAGGAGACAACATTGCCGCTTCCTACTACCACTCGGTGAGTCC
EST: gi|71436182|gb|DR817232.1|DR817232
EST:     AATGCTGGACTGAGCTACACGACGCCTGACTTTGTTGCTGCAGCGACTTT                         GAACAACAAAGGAGACAACATTGCCGCTTCCTACTACCACTCGGTGAGTCC
genomic: AATGCTGGACTGAGCTACACGACGCCTGACTTTGTTGCTGCAGCGACTTTgtaagtagtc ... tgcatttcagGAACAACAAAGGAGACAACATTGCCGCTTCCTACTACCACTCGGTGAGTCC
EST: gi|211465080|gb|FL333212.1|FL333212
EST:     AATGCTGGACTGAGCTACACTACGCCTGACTTTGTTGCTGCAGCGACTTT                         GAACAACAAAGGAGACAACATTGCCGCTTCCTACTACCACTCGGTGAGTCC
genomic: AATGCTGGACTGAGCTACACGACGCCTGACTTTGTTGCTGCAGCGACTTTgtaagtagtc ... tgcatttcagGAACAACAAAGGAGACAACATTGCCGCTTCCTACTACCACTCGGTGAGTCC
EST: gi|78111025|gb|DV529422.1|DV529422
EST:     AATGCTGGACTGAGCTACACGACGCCTGACTTTGTTGCTGCAGCGACTTT                         GAACAACAAAGGAGACAACATTGCCGCTTCCTACTACCACTCGGTGAGTCC
genomic: AATGCTGGACTGAGCTACACGACGCCTGACTTTGTTGCTGCAGCGACTTTgtaagtagtc ... tgcatttcagGAACAACAAAGGAGACAACATTGCCGCTTCCTACTACCACTCGGTGAGTCC
EST: gi|149014219|gb|EE043774.2|EE043774
EST:     AATGCTGGACTGAGCTACACGACGCCTGACTTTGTTGCTGCAGCGACTTT                         GAACAACAAAGGAGACAACATTGCCGCTTCCTACTACCACTCGGTGAGTCC
genomic: AATGCTGGACTGAGCTACACGACGCCTGACTTTGTTGCTGCAGCGACTTTgtaagtagtc ... tgcatttcagGAACAACAAAGGAGACAACATTGCCGCTTCCTACTACCACTCGGTGAGTCC
EST: gi|76917795|gb|DV167006.1|DV167006
EST:     AATGCTGGACTGAGCTACACGACGCCTGACTTTGTTGCTGCAGCGACTTT                         GAACAACAAAGGAGACAACATTGCCGCTTCCTACTACCACTCGGTGAGTCC
genomic: AATGCTGGACTGAGCTACACGACGCCTGACTTTGTTGCTGCAGCGACTTTgtaagtagtc ... tgcatttcagGAACAACAAAGGAGACAACATTGCCGCTTCCTACTACCACTCGGTGAGTCC
EST: gi|149081524|gb|EE170660.2|EE170660
EST:     AATGCTGGACTGAGCTACACGACGCCTGACTTTGTTGCTGCAGCGACTTT                         GAACAACAAAGGAGACAACATTGCCGCTTCCTACTACCACTCGGTGAGTCC
genomic: AATGCTGGACTGAGCTACACGACGCCTGACTTTGTTGCTGCAGCGACTTTgtaagtagtc ... tgcatttcagGAACAACAAAGGAGACAACATTGCCGCTTCCTACTACCACTCGGTGAGTCC
EST: gi|76282636|gb|DV022204.1|DV022204
EST:     AATGCTGGACTGAGCTACACGACGCCTGACTTTGTTGCTGCAGCGACTTT                         GAACAACAAAGGAGACAACATTGCCGCTTCCTACTACCACTCGGTGAGTCC
genomic: AATGCTGGACTGAGCTACACGACGCCTGACTTTGTTGCTGCAGCGACTTTgtaagtagtc ... tgcatttcagGAACAACAAAGGAGACAACATTGCCGCTTCCTACTACCACTCGGTGAGTCC
EST: gi|37384049|gb|CF629069.1|CF629069
EST:     AATGCTGGACTGAGCTACACGACGCCTGACTTTGTTGCTGCAGCGACTTT                         GAACAACAAAGGAGACAACATTGCCGCTTCCTACTACCACTCGGTGAGTCC
genomic: AATGCTGGACTGAGCTACACGACGCCTGACTTTGTTGCTGCAGCGACTTTgtaagtagtc ... tgcatttcagGAACAACAAAGGAGACAACATTGCCGCTTCCTACTACCACTCGGTGAGTCC
EST: gi|37381575|gb|CF627683.1|CF627683
EST:     CACGACGCCTGACTTTGTTGCTGCAGCGACTTT                         GAACAACAAAGGAGACAACATTGCCGCTTCCTACTACCACTCGGTGAGTCC
genomic: CACGACGCCTGACTTTGTTGCTGCAGCGACTTTgtaagtagtc ... tgcatttcagGAACAACAAAGGAGACAACATTGCCGCTTCCTACTACCACTCGGTGAGTCC
EST: gi|91056164|gb|EB166582.1|EB166582
EST:     AATGCTGGACTGAGCTACACGACGCCTGACTTTGTTGCTGCAGCGACTTT                         GAACAACAAAGGAGACAACATTGCCGCTTCCTACTACCACTCGGTGAGTCC
genomic: AATGCTGGACTGAGCTACACGACGCCTGACTTTGTTGCTGCAGCGACTTTgtaagtagtc ... tgcatttcagGAACAACAAAGGAGACAACATTGCCGCTTCCTACTACCACTCGGTGAGTCC
EST: gi|71762973|gb|DR960910.1|DR960910
EST:     AATGCTGGACTGAGCTACACGACGCCTGACTTTGTTGCTGCAGCGACTTT                         GAACAACAAAGGAGACAACATTGCCGCTTCCTACTACCACTCGGTGAGTCC
genomic: AATGCTGGACTGAGCTACACGACGCCTGACTTTGTTGCTGCAGCGACTTTgtaagtagtc ... tgcatttcagGAACAACAAAGGAGACAACATTGCCGCTTCCTACTACCACTCGGTGAGTCC
EST: gi|149110783|gb|EE294300.2|EE294300
EST:     AATGCTGGACTGAGCTACACGACGCCTGACTTTGTTGCTGCAGCGACTTT                         GAACAACAAAGGAGACAACATTGCCGCTTCCTACTACCACTCGGTGAGTCC
genomic: AATGCTGGACTGAGCTACACGACGCCTGACTTTGTTGCTGCAGCGACTTTgtaagtagtc ... tgcatttcagGAACAACAAAGGAGACAACATTGCCGCTTCCTACTACCACTCGGTGAGTCC
EST: gi|60398901|gb|DN231717.1|DN231717
EST:     AATGCTGGACTGAGCTACACGACGCCTGACTTTGTTGCTGCAGCGACTTT                         GAACAACAAAGGAGACAACATTGCCGCTTCCTACTACCACTCGGTGAGTCC
genomic: AATGCTGGACTGAGCTACACGACGCCTGACTTTGTTGCTGCAGCGACTTTgtaagtagtc ... tgcatttcagGAACAACAAAGGAGACAACATTGCCGCTTCCTACTACCACTCGGTGAGTCC
EST: gi|86471710|gb|DY238080.1|DY238080
EST:     AATGCTGGACTGAGTTACACGACGCCTGACTTTGTTGCTGCAGCGACTTT                         GAACAACAAAGGAGACAACATTGCCGCTTCCTACTACCACTCGGTGAGTCC
genomic: AATGCTGGACTGAGCTACACGACGCCTGACTTTGTTGCTGCAGCGACTTTgtaagtagtc ... tgcatttcagGAACAACAAAGGAGACAACATTGCCGCTTCCTACTACCACTCGGTGAGTCC
EST: gi|101399940|gb|EB821817.1|EB821817
EST:     AATGCTGGACTGAGCTACACGACGCCTGACTTTGTTGCTGCAGCGACTTT                         GAACAACAAAGGAGACAACATTGCCGCTTCCTACTACCACTCGGTGAGTCC
genomic: AATGCTGGACTGAGCTACACGACGCCTGACTTTGTTGCTGCAGCGACTTTgtaagtagtc ... tgcatttcagGAACAACAAAGGAGACAACATTGCCGCTTCCTACTACCACTCGGTGAGTCC
EST: gi|89764236|gb|DY691118.1|DY691118
EST:     AATGCTGGACTGAGCTACACGACGCCTGACTTTGTTGCTGCAGCGACTTT                         GAACAACAAAGGAGACAACATTGCCGCTTCCTACTACCACTCGGTGAGTCC
genomic: AATGCTGGACTGAGCTACACGACGCCTGACTTTGTTGCTGCAGCGACTTTgtaagtagtc ... tgcatttcagGAACAACAAAGGAGACAACATTGCCGCTTCCTACTACCACTCGGTGAGTCC
EST: gi|166475027|gb|EG188355.1|EG188355
EST:     CTGCAGCGACTTT                         GAACAACAAAGGAGACAACATTGCCGCTTCCTACTACCACTCGGTGAGTCC
genomic: CTGCAGCGACTTTgtaagtagtc ... tgcatttcagGAACAACAAAGGAGACAACATTGCCGCTTCCTACTACCACTCGGTGAGTCC
EST: gi|17929524|gb|BM266484.1|BM266484
EST:     AATGCTGGACTGAGCTACACGACGCCTGACTTTGTTGCTGCAGCGACTTT                         GAACAACAAAGGAGACAACATTGCCGCTTCCTACTACCACTCGGTGAGTCC
genomic: AATGCTGGACTGAGCTACACGACGCCTGACTTTGTTGCTGCAGCGACTTTgtaagtagtc ... tgcatttcagGAACAACAAAGGAGACAACATTGCCGCTTCCTACTACCACTCGGTGAGTCC
EST: gi|76917796|gb|DV167007.1|DV167007
EST:     AATGCTGGACTGAGCTACACGACGCCTGACTTTGTTGCTGCAGCGACTTT                         GAACAACAAAGGAGACAACATTGCCGCTTCCTACTACCACTCGGTGAGTCC
genomic: AATGCTGGACTGAGCTACACGACGCCTGACTTTGTTGCTGCAGCGACTTTgtaagtagtc ... tgcatttcagGAACAACAAAGGAGACAACATTGCCGCTTCCTACTACCACTCGGTGAGTCC
EST: gi|71303230|gb|DR787717.1|DR787717
EST:     AATGCTGGACTGAGCTACACGACGCCTGACTTTGTTGCTGCAGCGACTTT                         GAACAACAAAGGAGAACA-CATTGCCGCTTC-TACTACCACTCGGGGAGTC
genomic: AATGCTGGACTGAGCTACACGACGCCTGACTTTGTTGCTGCAGCGACTTTgtaagtagtc ... tgcatttcagGAACAACAAAGGAGA-CAACATTGCCGCTTCCTACTACCACTCGGTGAGTC
EST: gi|37394442|gb|CF634495.1|CF634495
EST:     AATGCTGGACTGAGCTACACGACGCCTGACTTTGTTGCTGCAGCGACTTT                         GAACAACAAAGGAGACAACATTGCCGCTTCCTACTACCACTCGGTGAGTCC
genomic: AATGCTGGACTGAGCTACACGACGCCTGACTTTGTTGCTGCAGCGACTTTgtaagtagtc ... tgcatttcagGAACAACAAAGGAGACAACATTGCCGCTTCCTACTACCACTCGGTGAGTCC
EST: gi|78023309|gb|DV491696.1|DV491696
EST:     AATGCTGGACTGAGTTACACGACGCCTGACTTTGTTGCTGCAGCGACTTT                         GAACAACAAAGGAGACAACATTGCCGCTTCCTACTACCACTCGGTGAGTCC
genomic: AATGCTGGACTGAGCTACACGACGCCTGACTTTGTTGCTGCAGCGACTTTgtaagtagtc ... tgcatttcagGAACAACAAAGGAGACAACATTGCCGCTTCCTACTACCACTCGGTGAGTCC
EST: gi|89764235|gb|DY691117.1|DY691117
EST:     AATGCTGGACTGAGCTACACGACGCCTGACTTTGTTGCTGCAGCGACTTT                         GAACAACAAAGGAGACAACATTGCCGCTTCCTACTACCACTCGGTGAGTCC
genomic: AATGCTGGACTGAGCTACACGACGCCTGACTTTGTTGCTGCAGCGACTTTgtaagtagtc ... tgcatttcagGAACAACAAAGGAGACAACATTGCCGCTTCCTACTACCACTCGGTGAGTCC
EST: gi|101395788|gb|EB819821.1|EB819821
EST:     AATGCTGGACTGAGCTACACGACGCCTGACTTTGTTGCTGCAGCGACTTT                         GAACAACAAAGGAGACAAAATTGCCGCTTCCTACTACCACTCCGG-GAGTC
genomic: AATGCTGGACTGAGCTACACGACGCCTGACTTTGTTGCTGCAGCGACTTTgtaagtagtc ... tgcatttcagGAACAACAAAGGAGACAACATTGCCGCTTCCTACTACCACTC-GGTGAGTC
EST: gi|148963151|gb|EE014120.2|EE014120
EST:     AATGCTGGACTGAGCTACACGACGCCTGACTTTGTTGCTGCAGCGACTTT                         GAACAACAAAGGAGACAACATTGCCGCTTCCTACTACCACTCGGTGAGTCC
genomic: AATGCTGGACTGAGCTACACGACGCCTGACTTTGTTGCTGCAGCGACTTTgtaagtagtc ... tgcatttcagGAACAACAAAGGAGACAACATTGCCGCTTCCTACTACCACTCGGTGAGTCC
EST: gi|14243919|gb|BG841550.2|BG841550
EST:     AATGCTGGACTGAGCTACACGACGCCTGACTTTGTTGCTGCAGCGACTTT                         GAACAACAAAGGAGACAACATTGCCGCTTCCTACTACCACTCGGTGAGTCC
genomic: AATGCTGGACTGAGCTACACGACGCCTGACTTTGTTGCTGCAGCGACTTTgtaagtagtc ... tgcatttcagGAACAACAAAGGAGACAACATTGCCGCTTCCTACTACCACTCGGTGAGTCC
EST: gi|71448665|gb|DR829715.1|DR829715
EST:     AATGCTGGACTGAGCTACACGACGCCTGACTTTGTTGCTGCAGCGACTTT                         GAACAACAAAGGAGACAACATTGCCGCTTCCTACTACCACTCGGTGAGTCC
genomic: AATGCTGGACTGAGCTACACGACGCCTGACTTTGTTGCTGCAGCGACTTTgtaagtagtc ... tgcatttcagGAACAACAAAGGAGACAACATTGCCGCTTCCTACTACCACTCGGTGAGTCC
EST: gi|94474851|gb|EB703809.1|EB703809
EST:     AATGCTGGACTGAGCTACACGACGCCTGACTTTGTTGCTGCAGCGACTTT                         GAACAACAAAGGAGACAACATTGCCGCTTCCTACTACCACTCGGTGAGTCC
genomic: AATGCTGGACTGAGCTACACGACGCCTGACTTTGTTGCTGCAGCGACTTTgtaagtagtc ... tgcatttcagGAACAACAAAGGAGACAACATTGCCGCTTCCTACTACCACTCGGTGAGTCC
EST: gi|15554265|gb|BI644263.1|BI644263
EST:     AATGCTGGACTGAGCTACACGACGCCTGACTTTGTTGCTGCAGCGACTTT                         GAACAACAAAGGAGACAACATTGCCGCTTCCTACTACCACTCGGTGAGTCC
genomic: AATGCTGGACTGAGCTACACGACGCCTGACTTTGTTGCTGCAGCGACTTTgtaagtagtc ... tgcatttcagGAACAACAAAGGAGACAACATTGCCGCTTCCTACTACCACTCGGTGAGTCC
EST: gi|74241152|gb|DT649066.1|DT649066
EST:     AATGCTGGACTGAGCTACACGACGCCTGACTTTGTTGCTGCAGCGACTTT                         GAACAACAAAGGAGACAACATTGCCGCTTCCTACTACCACTCGGTGAGTCC
genomic: AATGCTGGACTGAGCTACACGACGCCTGACTTTGTTGCTGCAGCGACTTTgtaagtagtc ... tgcatttcagGAACAACAAAGGAGACAACATTGCCGCTTCCTACTACCACTCGGTGAGTCC
EST: gi|71430935|gb|DR811985.1|DR811985
EST:     AATGCTGGACTGAGCTACACGACGCCTGACTTTGTTGCTGCAGCGACTTT                         GAACAACAAAGGAGACAACATTGCCGCTTCCTACTACCACTCGGTGAGTCC
genomic: AATGCTGGACTGAGCTACACGACGCCTGACTTTGTTGCTGCAGCGACTTTgtaagtagtc ... tgcatttcagGAACAACAAAGGAGACAACATTGCCGCTTCCTACTACCACTCGGTGAGTCC
EST: gi|148963152|gb|EE014121.2|EE014121
EST:     AATGCTGGACTGAGCTACACGACGCCTGACTTTGTTGCTGCAGCGACTTT                         GAACAACAAAGGAGACAACATTGCCGCTTCCTACTACCACTCGGTGAGTCC
genomic: AATGCTGGACTGAGCTACACGACGCCTGACTTTGTTGCTGCAGCGACTTTgtaagtagtc ... tgcatttcagGAACAACAAAGGAGACAACATTGCCGCTTCCTACTACCACTCGGTGAGTCC
EST: gi|5901207|gb|AW042307.1|AW042307
EST:     AATGCTGGACTGAGCTACACGACGCCTGACTTTGTTGCTGCAGCGACTTT                         GAACAACAAAGGAGACAACATTGCCGCTTCCTACTACCACTCGGTGAGTCC
genomic: AATGCTGGACTGAGCTACACGACGCCTGACTTTGTTGCTGCAGCGACTTTgtaagtagtc ... tgcatttcagGAACAACAAAGGAGACAACATTGCCGCTTCCTACTACCACTCGGTGAGTCC
EST: gi|71757444|gb|DR955381.1|DR955381
EST:     AATGCTGGACTGAGCTACACGACGCCTGACTTTGTTGCTGCAGCGACTTT                         GAACAACAAAGGAGACAACATTGCCGCTTCCTACTACCACTCGGTGAGTCC
genomic: AATGCTGGACTGAGCTACACGACGCCTGACTTTGTTGCTGCAGCGACTTTgtaagtagtc ... tgcatttcagGAACAACAAAGGAGACAACATTGCCGCTTCCTACTACCACTCGGTGAGTCC
EST: gi|149080662|gb|EE169719.2|EE169719
EST:     AATGCTGGACTGAGCTACACGACGCCTGACTTTGTTGCTGCAGCGACTTT                         GAACAACAAAGGAGACAACATTGCCGCTTCCTACTACCACTCGGTGAGTTC
genomic: AATGCTGGACTGAGCTACACGACGCCTGACTTTGTTGCTGCAGCGACTTTgtaagtagtc ... tgcatttcagGAACAACAAAGGAGACAACATTGCCGCTTCCTACTACCACTCGGTGAGTCC
EST: gi|149013973|gb|EE043481.2|EE043481
EST:     AATGCTGGACTGAGCTACACGACGCCTGACTTTGTTGCTGCAGCGACTTT                         GAACAACAAAGGAGACAACATTGCCGCTTCCTACTACCACTCGGTGAGTCC
genomic: AATGCTGGACTGAGCTACACGACGCCTGACTTTGTTGCTGCAGCGACTTTgtaagtagtc ... tgcatttcagGAACAACAAAGGAGACAACATTGCCGCTTCCTACTACCACTCGGTGAGTCC
EST: gi|91054071|gb|EB164489.1|EB164489
EST:     AATGCTGGACTGAGCTACACGACGCCTGACTTTGTTGCTGCAGCGACTTT                         GAACAACAAAGGAGACAACATTGCCGCTTCCTACTACCACTCGGTGAGTCC
genomic: AATGCTGGACTGAGCTACACGACGCCTGACTTTGTTGCTGCAGCGACTTTgtaagtagtc ... tgcatttcagGAACAACAAAGGAGACAACATTGCCGCTTCCTACTACCACTCGGTGAGTCC
EST: gi|93012482|gb|EB638002.1|EB638002
EST:     AATGCTGGACTGAGCTACACGACGCCTGACTTTGTTGCTGCAGCGACTTT                         GAACAACAAAGGAGACAACATTGCCGCTTCCTACTACCACTCGGTGAGTCC
genomic: AATGCTGGACTGAGCTACACGACGCCTGACTTTGTTGCTGCAGCGACTTTgtaagtagtc ... tgcatttcagGAACAACAAAGGAGACAACATTGCCGCTTCCTACTACCACTCGGTGAGTCC
EST: gi|88748848|gb|DY532989.1|DY532989
EST:     AATGCTGGACTGAGCTACACGACGCCTGACTTTGTTGCTGCAGCGACTTT                         GAACAACAAAGGAGACAACATTGCCGCTTCCTACTACCACTCGGTGAGTCC
genomic: AATGCTGGACTGAGCTACACGACGCCTGACTTTGTTGCTGCAGCGACTTTgtaagtagtc ... tgcatttcagGAACAACAAAGGAGACAACATTGCCGCTTCCTACTACCACTCGGTGAGTCC
EST: gi|110949561|gb|EE169718.1|EE169718
EST:     AATGCTGGACTGAGCTACACGACGCCTGACTTTGTTGCTGCAGCGACTTT                         GAACAACAAAGGAGACAACATTGCCGCTTCCTACTACCACTCGGTGAGTCC
genomic: AATGCTGGACTGAGCTACACGACGCCTGACTTTGTTGCTGCAGCGACTTTgtaagtagtc ... tgcatttcagGAACAACAAAGGAGACAACATTGCCGCTTCCTACTACCACTCGGTGAGTCC
EST: gi|76289467|gb|DV029035.1|DV029035
EST:     AATGCTGGACTGAGCTACACGACGCCTGACTTTGTTGCTGCAGCGACTTT                         GAACAACAAAGGAGACAACATTGCCGCTTCCTACTACCACTCGGTGAGTCC
genomic: AATGCTGGACTGAGCTACACGACGCCTGACTTTGTTGCTGCAGCGACTTTgtaagtagtc ... tgcatttcagGAACAACAAAGGAGACAACATTGCCGCTTCCTACTACCACTCGGTGAGTCC
EST: gi|213191071|gb|FM193242.1|FM193242
EST:     AATGCTGGACTGAGCTACACGACGCCTGACTTTGTTGCTGCAGCGACTTT                         GAACCNCAAAGGAGACCACATTGCCGCTTCCTACTACNACTCGGTGAGTCC
genomic: AATGCTGGACTGAGCTACACGACGCCTGACTTTGTTGCTGCAGCGACTTTgtaagtagtc ... tgcatttcagGAACAACAAAGGAGACAACATTGCCGCTTCCTACTACCACTCGGTGAGTCC
EST: gi|101390349|gb|EB817109.1|EB817109
EST:     AATGCTGGACTGAGCTACACGACGCCTGACTTTGTTGCTGCAGCGACTTT                         GAACAACAAAGGAGACAACATTGCCGCTTCCTACTACCACTCGGTGAGTCC
genomic: AATGCTGGACTGAGCTACACGACGCCTGACTTTGTTGCTGCAGCGACTTTgtaagtagtc ... tgcatttcagGAACAACAAAGGAGACAACATTGCCGCTTCCTACTACCACTCGGTGAGTCC
EST: gi|91873213|gb|EB403170.1|EB403170
EST:     AATGCTGGACTGAGCTACACGACGCCTGACTTTGTTGCTGCAGCGACTTT                         GAACAACAAAGGAGACAACATTGCCGCTTCCTACTACCACTCGGTGAGTCC
genomic: AATGCTGGACTGAGCTACACGACGCCTGACTTTGTTGCTGCAGCGACTTTgtaagtagtc ... tgcatttcagGAACAACAAAGGAGACAACATTGCCGCTTCCTACTACCACTCGGTGAGTCC
EST: gi|18166597|gb|BM336436.1|BM336436
EST:     CTTTGTTGCTGCAGCGACTTT                         GAACAACAAAGGAGACAACATTGCCGCTTCCTACTACCACTCGGTGAGTCC
genomic: CTTTGTTGCTGCAGCGACTTTgtaagtagtc ... tgcatttcagGAACAACAAAGGAGACAACATTGCCGCTTCCTACTACCACTCGGTGAGTCC
EST: gi|149107027|gb|EE188922.2|EE188922
EST:     AATGCTGGACTGAGCTACACGACGCCTGACTTTGTTGCTGCAGCGACTTT                         GAACAACAAAGGAGACAACATTGCCGCTTCCTACTACCACTCGGTGAGTCC
genomic: AATGCTGGACTGAGCTACACGACGCCTGACTTTGTTGCTGCAGCGACTTTgtaagtagtc ... tgcatttcagGAACAACAAAGGAGACAACATTGCCGCTTCCTACTACCACTCGGTGAGTCC
EST: gi|148950071|gb|EC895603.2|EC895603
EST:     AATGCTGGACTGAGCTACACGACGCCTGACTTTGTTGCTGCAGCGACTTT                         GAACAACAAAGGAGACAACATTGCCGCTTCCTACTACCACTCGGTGAGTCC
genomic: AATGCTGGACTGAGCTACACGACGCCTGACTTTGTTGCTGCAGCGACTTTgtaagtagtc ... tgcatttcagGAACAACAAAGGAGACAACATTGCCGCTTCCTACTACCACTCGGTGAGTCC
EST: gi|71757445|gb|DR955382.1|DR955382
EST:     AATGCTGGACTGAGCTACACGACGCCTGACTTTGTTGCTGCAGCGACTTT                         GAACAACAAAGGAGACAACATTGCCGCTTCCTACTACCACTCGGTGAGTCC
genomic: AATGCTGGACTGAGCTACACGACGCCTGACTTTGTTGCTGCAGCGACTTTgtaagtagtc ... tgcatttcagGAACAACAAAGGAGACAACATTGCCGCTTCCTACTACCACTCGGTGAGTCC
EST: gi|50325873|gb|CO520999.1|CO520999
EST:     AATGCTGGACTGAGCTACACGACGCCTGACTTTGTTGCTGCAGCGACTTT                         GAACAACAAAGGAGACAACATTGCCGCTTCCTACTACCACTCG
genomic: AATGCTGGACTGAGCTACACGACGCCTGACTTTGTTGCTGCAGCGACTTTgtaagtagtc ... tgcatttcagGAACAACAAAGGAGACAACATTGCCGCTTCCTACTACCACTCG
EST: gi|5361229|gb|AI795649.1|AI795649
EST:     AGCTAC-CGACGCCTGACTTTGTTGCTGCAGCGACTTT                         GAACAACAAAGGAGACAACATTGCCGCTTCCTACTACCACTCGGTGAGTCC
genomic: AGCTACACGACGCCTGACTTTGTTGCTGCAGCGACTTTgtaagtagtc ... tgcatttcagGAACAACAAAGGAGACAACATTGCCGCTTCCTACTACCACTCGGTGAGTCC
EST: gi|78111026|gb|DV529423.1|DV529423
EST:     AATGCTGGACTGAGCTACACGACGCCTGACTTTGTTGCTGCAGCGACTTT                         GAACAACAAAGGAGACAACATTGCCGCTTCCTACTACCACTCGGTGAGTCC
genomic: AATGCTGGACTGAGCTACACGACGCCTGACTTTGTTGCTGCAGCGACTTTgtaagtagtc ... tgcatttcagGAACAACAAAGGAGACAACATTGCCGCTTCCTACTACCACTCGGTGAGTCC
EST: gi|71303227|gb|DR787716.1|DR787716
EST:     AATGCTGGACTGAGCTACACGACGCCTGACTTTGTTGCTGCAGCGACTTT                         GAACAACAAAGGAGACAACATTGCCGCTTCCTACTACCACTCGGTGAGTCC
genomic: AATGCTGGACTGAGCTACACGACGCCTGACTTTGTTGCTGCAGCGACTTTgtaagtagtc ... tgcatttcagGAACAACAAAGGAGACAACATTGCCGCTTCCTACTACCACTCGGTGAGTCC
EST: gi|78109070|gb|DV527487.1|DV527487
EST:     AATGCTGGACTGAGCTACACGACGCCTGACTTTGTTGCTGCAGCGACTTT                         GAACAACAAAGGAGACAACATTGCCGCTTCCTACTACCACTCGGTGAGTCC
genomic: AATGCTGGACTGAGCTACACGACGCCTGACTTTGTTGCTGCAGCGACTTTgtaagtagtc ... tgcatttcagGAACAACAAAGGAGACAACATTGCCGCTTCCTACTACCACTCGGTGAGTCC
EST: gi|211148582|gb|FL032473.1|FL032473
EST:     AATGCTGGACTGAGCTACACGACGCCTGACTTTGTTGCTGCAGCGACTTT                         GAACAACAAAGGAGACAACATTGCCGCTTCCTACTACCACTCGGTGAGTCC
genomic: AATGCTGGACTGAGCTACACGACGCCTGACTTTGTTGCTGCAGCGACTTTgtaagtagtc ... tgcatttcagGAACAACAAAGGAGACAACATTGCCGCTTCCTACTACCACTCGGTGAGTCC
EST: gi|60341814|gb|DN208787.1|DN208787
EST:     AATGCTGGACTGAGCTACACGACGCCTGACTTTGTTGCTGCAGCGACTTT                         GAACAACAAAGGAGACAACATTGCCGCTTCCTACTACCACTCGGTGAGTCC
genomic: AATGCTGGACTGAGCTACACGACGCCTGACTTTGTTGCTGCAGCGACTTTgtaagtagtc ... tgcatttcagGAACAACAAAGGAGACAACATTGCCGCTTCCTACTACCACTCGGTGAGTCC
EST: gi|71759666|gb|DR957603.1|DR957603
EST:     AATGCTGGACTGAGCTACACGACGCCTGACTTTGTTGCTGCAGCGACTTT                         GAACAACAAAGGAGACAACATTGCCGCTTCCTACTACCACTCGGTGAGTCC
genomic: AATGCTGGACTGAGCTACACGACGCCTGACTTTGTTGCTGCAGCGACTTTgtaagtagtc ... tgcatttcagGAACAACAAAGGAGACAACATTGCCGCTTCCTACTACCACTCGGTGAGTCC
EST: gi|149083875|gb|EE173251.2|EE173251
EST:     AATGCTGGACTGAGCTACACGACGCCTGACTTTGTTGCTGCAGCGACTTT                         GAACAACAAAGGAGACAACATTGCCGCTTCCTACTACCACTCGGTGAGTCC
genomic: AATGCTGGACTGAGCTACACGACGCCTGACTTTGTTGCTGCAGCGACTTTgtaagtagtc ... tgcatttcagGAACAACAAAGGAGACAACATTGCCGCTTCCTACTACCACTCGGTGAGTCC
EST: gi|9255285|gb|BE345753.1|BE345753
EST:     AATGCTGGACTGAGCTACACGACGCCTGACTTTGTTGCTGCAGCGACTTT                         GAACAACAAAGGAGACAACATTGCCGCTTCCTACTACCACTCGGTGAGTCC
genomic: AATGCTGGACTGAGCTACACGACGCCTGACTTTGTTGCTGCAGCGACTTTgtaagtagtc ... tgcatttcagGAACAACAAAGGAGACAACATTGCCGCTTCCTACTACCACTCGGTGAGTCC
EST: gi|15590470|gb|BI675086.1|BI675086
EST:     AATGCTGGACTGAGCTACACGACGCCTGACTTTGTTGCTGCAGCGACTTT                         GAACAACAAAGGAGACAACATTGCCGC
genomic: AATGCTGGACTGAGCTACACGACGCCTGACTTTGTTGCTGCAGCGACTTTgtaagtagtc ... tgcatttcagGAACAACAAAGGAGACAACATTGCCGC
EST: gi|28983257|gb|BQ538582.2|BQ538582
EST:     AATGCTGGACTGAGCTACACGACGCCTGACTTTGTTGCTGCAGCGACTTT                         GAACAACAAAGGAGACAACATTGCCGCTTCCTACTACCACTCGGTGAGTCC
genomic: AATGCTGGACTGAGCTACACGACGCCTGACTTTGTTGCTGCAGCGACTTTgtaagtagtc ... tgcatttcagGAACAACAAAGGAGACAACATTGCCGCTTCCTACTACCACTCGGTGAGTCC
EST: gi|71436181|gb|DR817231.1|DR817231
EST:     AATGCTGGACTGAGCTACACGACGCCTGACTTTGTTGCTGCAGCGACTTT                         GAACAACAAAGGAGACAACATTGCCGCTTCCTACTACCACTCGGTGAGTCC
genomic: AATGCTGGACTGAGCTACACGACGCCTGACTTTGTTGCTGCAGCGACTTTgtaagtagtc ... tgcatttcagGAACAACAAAGGAGACAACATTGCCGCTTCCTACTACCACTCGGTGAGTCC
EST: gi|211084193|gb|FL360421.1|FL360421
EST:     AATGCTGGACTGAGCTACACGACGCCTGACTTTGTTGCTGCAGCGACTTT                         GAACAACAAAGGAGACAACATTGCCGCTTCCTACTACCACTCGGTGAGTCC
genomic: AATGCTGGACTGAGCTACACGACGCCTGACTTTGTTGCTGCAGCGACTTTgtaagtagtc ... tgcatttcagGAACAACAAAGGAGACAACATTGCCGCTTCCTACTACCACTCGGTGAGTCC
EST: gi|101390351|gb|EB817110.1|EB817110
EST:     AATGCTGGACTGAGCTACACGACGCCTGACTTTGTTGCTGCAGCGACTTT                         GAACAACAAAAGGAGAAAACATTGCCGCTTCCTACTACCACTCGGTGAGTC
genomic: AATGCTGGACTGAGCTACACGACGCCTGACTTTGTTGCTGCAGCGACTTTgtaagtagtc ... tgcatttcagGAACAACAAA-GGAGACAACATTGCCGCTTCCTACTACCACTCGGTGAGTC
EST: gi|71440869|gb|DR821919.1|DR821919
EST:     AATGCTGGACTGAGCTACACGACGCCTGACTTTGTTGCTGCAGCGACTTT                         GAACAACAAAGGAGACAACATTGCCGCTTCCTACTACCACTCGGTGAGTCC
genomic: AATGCTGGACTGAGCTACACGACGCCTGACTTTGTTGCTGCAGCGACTTTgtaagtagtc ... tgcatttcagGAACAACAAAGGAGACAACATTGCCGCTTCCTACTACCACTCGGTGAGTCC
EST: gi|71309598|gb|DR791077.1|DR791077
EST:     AATGCTGGACTGAGCTACACGACGCCTGACTTTGTTGCTGCAGCGACTTT                         GAACAACAAAGGAGACAACATTGCCGCTTCCTACTACCACTCGGTGAGTCC
genomic: AATGCTGGACTGAGCTACACGACGCCTGACTTTGTTGCTGCAGCGACTTTgtaagtagtc ... tgcatttcagGAACAACAAAGGAGACAACATTGCCGCTTCCTACTACCACTCGGTGAGTCC
EST: gi|15590469|gb|BI675085.1|BI675085
EST:     AATGCTGGACTGAGCTACACGACGCCTGACTTTGTTGCTGCAGCGACTTT                         GAACAACAAAGGAG
genomic: AATGCTGGACTGAGCTACACGACGCCTGACTTTGTTGCTGCAGCGACTTTgtaagtagtc ... tgcatttcagGAACAACAAAGGAG

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 47 (upstream exon), 49 (downstream exon)
Score: 258

TTGGCGCTGATGCTGCATTTGATACTTCTTCTGGGGACTTAACCAAATACAATGCTGGACTGAGCTACACGACGCCTGACTTTGTTGCTGCAGCGACTTTgtaagtagtc ... tgcatttcagGAACAACAAAGGAGACAACATTGCCGCTTCCTACTACCACTCGGTGAGTCCAACCACAGCCGTCGGAGGAGAACTGAGCCACAGCTTCTCGACCAACGGG


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 299

TTGGCGCTGATGCTGCATTTGATACTTCTTCTGGGGACTTAACCAAATACAATGCTGGACTGAGCTACACGACGCCTGACTTTGTTGCTGCAGCGACTTTgtaagtagtc ... tgcatttcagGAACAACAAAGGAGACAACATTGCCGCTTCCTACTACCACTCGGTGAGTCCAACCACAGCCGTCGGAGGAGAACTGAGCCACAGCTTCTCGACCAACGGG


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 319

TTGGCGCTGATGCTGCATTTGATACTTCTTCTGGGGACTTAACCAAATACAATGCTGGACTGAGCTACACGACGCCTGACTTTGTTGCTGCAGCGACTTTgtaagtagtc ... tgcatttcagGAACAACAAAGGAGACAACATTGCCGCTTCCTACTACCACTCGGTGAGTCCAACCACAGCCGTCGGAGGAGAACTGAGCCACAGCTTCTCGACCAACGGG


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 916

TTGGCGCTGATGCTGCATTTGATACTTCTTCTGGGGACTTAACCAAATACAATGCTGGACTGAGCTACACGACGCCTGACTTTGTTGCTGCAGCGACTTTgtaagtagtc ... tgcatttcagGAACAACAAAGGAGACAACATTGCCGCTTCCTACTACCACTCGGTGAGTCCAACCACAGCCGTCGGAGGAGAACTGAGCCACAGCTTCTCGACCAACGGG


Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TTGGCGCTGATGCTGCATTTGATACTTCTTCTGGGGACTTAACCAAATACAATGCTGGACTGAGCTACACGACGCCTGACTTTGTTGCTGCAGCGACTTTgtaagtagtctgtcacaatgcttaacagtttctgtttgtaactgttattagtgtcctagggatcacatttgcccttagcaccaatgccatctctagggaa

- - - - - - - - - - - - - - - - - - - - - - - - -  ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - -  GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  CTGCAG