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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATATGGTTTGTTTTTGGAAGAAAGGTTGGAGTGCTTCAGAGTTCTGAAGTATGATGTTGAAGCTGAGCGTTTGTCCAAACAAGGTCAAGGTCCTGAAAAGgtttgaaacattgtatctcagtttggtccttcaagcctgcaaatgattagttttgaggatcaccactttgtttagtttcagtaccattccactttactaattagtttgtcaactaattttcttgttgccatcag

Basic information

species Zea mays
transcript GRMZM2G114513_T03
intron # 5
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211053570|gb|FL256697.1|FL256697
EST:     ATGATGTTGAAGCTGAGCGTTTGTCCAAACAAGGTCAAGGTCCTGAAAAG                         GGTCACAGTAGAACCAGAGAGTTGGATTCACAGGATCTGTTANAGCAGCTG
genomic: ATGATGTTGAAGCTGAGCGTTTGTCCAAACAAGGTCAAGGTCCTGAAAAGgtttgaaaca ... ttgccatcagGGTCACAGTAGAACCAGAGAGTTGGATTCACAGGATCTGTTAGAGCAGCTG
EST: gi|211092899|gb|FL067769.1|FL067769
EST:     ATGATGTTGAAGCTGAGCGTTTGTCCAAACAAGGTCAAGGTCCTGAAAAG                         G-TCACAGTAGAAACAGAGAGT
genomic: ATGATGTTGAAGCTGAGCGTTTGTCCAAACAAGGTCAAGGTCCTGAAAAGgtttgaaaca ... ttgccatcagGGTCACAGTAGAACCAGAGAGT
EST: gi|211095361|gb|FL067770.1|FL067770
EST:     ATGATGTTGAAGCTGAGCGTTTGTCCAAACAAGGTCAAGGTCCTGAAAAG                         GGTCACAGTAGAACCAGAGAGTTGGATTCACAGGATCTGTTAGAGCAGCTG
genomic: ATGATGTTGAAGCTGAGCGTTTGTCCAAACAAGGTCAAGGTCCTGAAAAGgtttgaaaca ... ttgccatcagGGTCACAGTAGAACCAGAGAGTTGGATTCACAGGATCTGTTAGAGCAGCTG
EST: gi|211053576|gb|FL256703.1|FL256703
EST:     ATGATGTTGAAGCTGAGCGTTTGTCCAAACAAGGTCAAGGTCCTGAAAAG                         GGTCACAGTAGAACCAGAGAGTTGGATTCACAGGATCTGTTAGAGCAGCTG
genomic: ATGATGTTGAAGCTGAGCGTTTGTCCAAACAAGGTCAAGGTCCTGAAAAGgtttgaaaca ... ttgccatcagGGTCACAGTAGAACCAGAGAGTTGGATTCACAGGATCTGTTAGAGCAGCTG
EST: gi|211053574|gb|FL256701.1|FL256701
EST:     ATGATGTTGAAGCTGAGCGTTTGTCCAAACAAGGTCAAGGTCCTGAAAAG                         GGTCACAGTAGAACCAGAGAGTTGGATTCACAGGATCTGTTAGAGCAGCTG
genomic: ATGATGTTGAAGCTGAGCGTTTGTCCAAACAAGGTCAAGGTCCTGAAAAGgtttgaaaca ... ttgccatcagGGTCACAGTAGAACCAGAGAGTTGGATTCACAGGATCTGTTAGAGCAGCTG
EST: gi|211092898|gb|FL067768.1|FL067768
EST:     GATNGT-GAAGCTGAGCGTTTGGTC-AAACAAGGTCAAGGTCCTGAAAAG                         GGTCACAGTAGAAACCAGAGAGT-GGATTCACAGGATCTGGTAGAGCAGCT
genomic: GAT-GTTGAAGCTGAGCGTTTG-TCCAAACAAGGTCAAGGTCCTGAAAAGgtttgaaaca ... ttgccatcagGGTCACAGTAGAA-CCAGAGAGTTGGATTCACAGGATCTGTTAGAGCAGCT
EST: gi|211050624|gb|FL256691.1|FL256691
EST:     ATGATGTTGAAGCTGAGCGTTTGTCCAAACAAGGTCAAGGTCCTGAAAAG                         GGTCACAGTAGAACCAGAGAGTTGGATTCACAGGATCTGTTAGAGCAGCTG
genomic: ATGATGTTGAAGCTGAGCGTTTGTCCAAACAAGGTCAAGGTCCTGAAAAGgtttgaaaca ... ttgccatcagGGTCACAGTAGAACCAGAGAGTTGGATTCACAGGATCTGTTAGAGCAGCTG
EST: gi|211050619|gb|FL256686.1|FL256686
EST:     ATGATGTTGAAGCTGAGCGTTTGTCCAAACAAGGTCAAGGTCCTGAAAAG                         GGTCACAGTAGAACCAGAGAGTTGGATTCACAGGATCTGTTAGAGCAGCTG
genomic: ATGATGTTGAAGCTGAGCGTTTGTCCAAACAAGGTCAAGGTCCTGAAAAGgtttgaaaca ... ttgccatcagGGTCACAGTAGAACCAGAGAGTTGGATTCACAGGATCTGTTAGAGCAGCTG
EST: gi|211050626|gb|FL256693.1|FL256693
EST:     ATGATGTTGAAGCTGAGCGTTTGTCCAAACAAGGTCAAGGTCCTGAAAAG                         GGTCACAGTANAACCAGAGAGTTGGATTCACAGGATCTGNTAGAGCAGCTG
genomic: ATGATGTTGAAGCTGAGCGTTTGTCCAAACAAGGTCAAGGTCCTGAAAAGgtttgaaaca ... ttgccatcagGGTCACAGTAGAACCAGAGAGTTGGATTCACAGGATCTGTTAGAGCAGCTG
EST: gi|211053573|gb|FL256700.1|FL256700
EST:     ATGATGTTGAAGCTGAGCGTTTGTCCAAACAAGGTCAAGGTCCTGAAAAG                         GGTCACAGTAGAACCAGAGAGTTGGATTCACAGGATCTGTTAGAGCAGCTG
genomic: ATGATGTTGAAGCTGAGCGTTTGTCCAAACAAGGTCAAGGTCCTGAAAAGgtttgaaaca ... ttgccatcagGGTCACAGTAGAACCAGAGAGTTGGATTCACAGGATCTGTTAGAGCAGCTG
EST: gi|211050628|gb|FL256695.1|FL256695
EST:     ATGATGTTGAAGCTGAGCGTTTGTCCAAACAAGGTCAAGGTCCTGAAAAG                         GGTCACAGTAGAACCAGAGAGTTGGATTCACAGGATCTGTTAGAGCAGCTG
genomic: ATGATGTTGAAGCTGAGCGTTTGTCCAAACAAGGTCAAGGTCCTGAAAAGgtttgaaaca ... ttgccatcagGGTCACAGTAGAACCAGAGAGTTGGATTCACAGGATCTGTTAGAGCAGCTG
EST: gi|211050625|gb|FL256692.1|FL256692
EST:     ATGATGTTGAAGCTGAGCGTTTGTCCAAACAAGGTCAAGGTCCTGAAAAG                         GGTCACAGTAGAACCAGAGAGTTGGATTCACAGGATCTGTTAGAGCAGCTG
genomic: ATGATGTTGAAGCTGAGCGTTTGTCCAAACAAGGTCAAGGTCCTGAAAAGgtttgaaaca ... ttgccatcagGGTCACAGTAGAACCAGAGAGTTGGATTCACAGGATCTGTTAGAGCAGCTG
EST: gi|211380397|gb|FK976877.1|FK976877
EST:     ATGATGTTGAAGCTGAGCGTTTGTCCAAACAAGGTCAAGGTCCTGAAAAG                         GGTCACAGTAGAACCAGAGAGTTGGATTCACAGGATCTGTTAGA
genomic: ATGATGTTGAAGCTGAGCGTTTGTCCAAACAAGGTCAAGGTCCTGAAAAGgtttgaaaca ... ttgccatcagGGTCACAGTAGAACCAGAGAGTTGGATTCACAGGATCTGTTAGA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
ATATGGTTTGTTTTTGGAAGAAAGGTTGGAGTGCTTCAGAGTTCTGAAGTATGATGTTGAAGCTGAGCGTTTGTCCAAACAAGGTCAAGGTCCTGAAAAGgtttgaaacattgtatctcagtttggtccttcaagcctgcaaatgattagttttgaggatcaccactttgtttagtttcagtaccattccactttactaattagtttgtcaactaattttcttgttgccatcag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA