1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
ATACTTCGCGTATCAGCGCACATGGAAGCCTTTTAATCCGATCCTTGGAGAGACTTACGAGATGGTTAACCACCAGGGCATCACATTTCTTGCCGAGCAGgtcggtgatacgaatgtcatcgcagattaacttgaacggagacaactttgtcaacaaattttttctaattatgtattttgtactctcatttttatcag
species | Zea mays |
transcript | GRMZM2G114126_T02 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: AGACTTATGAGATGGTTAACCACCAGGGCATTACATTTCTTGCCGAGCAG GTAAGCCATCATCCCCCAATGGGTGTTGCTCACTGTGAGAATGAGCATTTTEST: gi|71438648|gb|DR819698.1|DR819698
genomic: AGACTTACGAGATGGTTAACCACCAGGGCATCACATTTCTTGCCGAGCAGgtcggtgata ... tttttatcagGTAAGCCATCATCCCCCAATGGGTGCTGCTCACTGTGAGAATGAGCATTTT
EST: AGACTTACGAGATGGTTAACCACCAGGGCATCACATTTCTTGCCGAGCAG GTAAGCCATCATCCCCCAATGGGTGCTGCTCACTGTGAGAATGAGCATTTTEST: gi|74236529|gb|DT644443.1|DT644443
genomic: AGACTTACGAGATGGTTAACCACCAGGGCATCACATTTCTTGCCGAGCAGgtcggtgata ... tttttatcagGTAAGCCATCATCCCCCAATGGGTGCTGCTCACTGTGAGAATGAGCATTTT
EST: GACTTACGAGATGGTTAACCACCAGGGCATCACATTTTCTTGCCGAGCAG GTAAGCCATCATCCCCCAATEST: gi|211354686|gb|FL118765.1|FL118765
genomic: GACTTACGAGATGGTTAACCACCAGGGCATCACATTT-CTTGCCGAGCAGgtcggtgata ... tttttatcagGTAAGCCATCATCCCCCAAT
EST: AGACTTATGAGATGGTTAACCACCAGGGCATTACATTTCTTGCCGAGCAG GTAAGCCATCATCCCCCAATGGGTGCTGCEST: gi|148961873|gb|EE012659.2|EE012659
genomic: AGACTTACGAGATGGTTAACCACCAGGGCATCACATTTCTTGCCGAGCAGgtcggtgata ... tttttatcagGTAAGCCATCATCCCCCAATGGGTGCTGC
EST: AGACTTACGAGATGGTTAACCACCAGGGCATCACATTTCTTGCCGAGCAG GTAAGCCATCATCCCCCAATGGGTGCTGCTCACTGTGAGAATGAGCATTTTEST: gi|71329770|gb|DR801598.1|DR801598
genomic: AGACTTACGAGATGGTTAACCACCAGGGCATCACATTTCTTGCCGAGCAGgtcggtgata ... tttttatcagGTAAGCCATCATCCCCCAATGGGTGCTGCTCACTGTGAGAATGAGCATTTT
EST: AGACTTACGAGATGGTTAACCACCAGGGCATCACATTTCTTGCCGAGCAG GTAAGCCATCATCCCCCAATGGGTGCTGCTCACTGTGAGAATGAGCATTTTEST: gi|87155561|gb|DY400350.1|DY400350
genomic: AGACTTACGAGATGGTTAACCACCAGGGCATCACATTTCTTGCCGAGCAGgtcggtgata ... tttttatcagGTAAGCCATCATCCCCCAATGGGTGCTGCTCACTGTGAGAATGAGCATTTT
EST: AGACTTATGAGATGGTTAACCACCAGGGCATTACATTTCTTGCCGAGCAG GTAAGCCATCATCCCC
genomic: AGACTTACGAGATGGTTAACCACCAGGGCATCACATTTCTTGCCGAGCAGgtcggtgata ... tttttatcagGTAAGCCATCATCCCC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATACTTCGCGTATCAGCGCACATGGAAGCCTTTTAATCCGATCCTTGGAGAGACTTACGAGATGGTTAACCACCAGGGCATCACATTTCTTGCCGAGCAGgtcggtgatacgaatgtcatcgcagattaacttgaacggagacaactttgtcaacaaattttttctaattatgtattttgtactctcatttttatcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG