1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
GCAATAATCAAAGATCCTTTGATGCTTAACAGTGTAATACTGGTACTTGCCAATAAGCAAGATATGgtgagccaaccacacttgactccttctaacacgaagattcctgaaaatgaatagttactcaaccatgcaaacactgttttgatgtatttatatctagctg...
species | Zea mays |
transcript | GRMZM2G113995_T01 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: CTTTGATGCTTAACAGTGTAATACTGGTACTTGCCCATAAGCAAGATATG AAAGGGGCAATGACACCAATGGAGGTGTGTGAGGGTCTTGGCCTCTACGAEST: gi|33771194|gb|CF273373.1|CF273373
genomic: CTTTGATGCTTAACAGTGTAATACTGGTACTTGCCAATAAGCAAGATATGgtgagccaac ... acttgtttagAAAGGGGCAATGACACCAATGGAGGTGTGTGAGGGTCTTGGCCTCTACGA
EST: CTTTGATGCTTAACAGTGTAATACTGGTACTTGCCAATAAGCAAGATATG AAAGGGGCAATGACACCAATGGAGGTGTGTGAGGGTCTTGGCCTCTACGATEST: gi|211266589|gb|FL404010.1|FL404010
genomic: CTTTGATGCTTAACAGTGTAATACTGGTACTTGCCAATAAGCAAGATATGgtgagccaac ... acttgtttagAAAGGGGCAATGACACCAATGGAGGTGTGTGAGGGTCTTGGCCTCTACGAT
EST: CTTTGATGCTTAACAGTGTAATACTGGTACTTGCCAATAAGCAAGATATG AAAGGGGCAATGACACCAATGGAGGTGTGTGAGGGTCTTGGCCTCTACGATEST: gi|211141968|gb|FL418185.1|FL418185
genomic: CTTTGATGCTTAACAGTGTAATACTGGTACTTGCCAATAAGCAAGATATGgtgagccaac ... acttgtttagAAAGGGGCAATGACACCAATGGAGGTGTGTGAGGGTCTTGGCCTCTACGAT
EST: TTTGATGCTTAACAAGTGTAATACTGGTACTTGCCAATAAGCAAGATATG AAAGGGGCAATGACACCAATGGAGGTGTGTGAGGGTCTTGGCCTCTACGATEST: gi|9731677|gb|BE510429.1|BE510429
genomic: TTTGATGCTTAACA-GTGTAATACTGGTACTTGCCAATAAGCAAGATATGgtgagccaac ... acttgtttagAAAGGGGCAATGACACCAATGGAGGTGTGTGAGGGTCTTGGCCTCTACGAT
EST: CTTTGATGCTTAACAGTGTAATACTGGTACTTGCCAATAAGCAAGATATG AAAGGGGCAATGACACCAATGGAGGTGTGTGAGGGTCTTGGCCTCTACGATEST: gi|211334235|gb|FL381816.1|FL381816
genomic: CTTTGATGCTTAACAGTGTAATACTGGTACTTGCCAATAAGCAAGATATGgtgagccaac ... acttgtttagAAAGGGGCAATGACACCAATGGAGGTGTGTGAGGGTCTTGGCCTCTACGAT
EST: CTTTGATGCTTAACAGTGTAATACTGGTACTTGCCAATAAGCAAGATATG AAAGGGGCAATGAC-CCAATGGGAGTGTTGTGTGAGGGTCTTGGCCTCTACEST: gi|211108318|gb|FL385993.1|FL385993
genomic: CTTTGATGCTTAACAGTGTAATACTGGTACTTGCCAATAAGCAAGATATGgtgagccaac ... acttgtttagAAAGGGGCAATGACACCAATGG-AG-GT-GTGTGAGGGTCTTGGCCTCTAC
EST: CTTTGATGCTTAACAGTGTAATACTGGTACTTGCCAATAAGCAAGATATG AAAGGGGCAATGACACCAATGGAGGTGTGTGAGGGTCTTGGCCTCTACGATEST: gi|9731678|gb|BE510430.1|BE510430
genomic: CTTTGATGCTTAACAGTGTAATACTGGTACTTGCCAATAAGCAAGATATGgtgagccaac ... acttgtttagAAAGGGGCAATGACACCAATGGAGGTGTGTGAGGGTCTTGGCCTCTACGAT
EST: CTTTGATGCTTAACAGTGTAATACTGGTACTTGCCAATAAGCAAGATATG AAAGGGGCAATGACACCAATGGAGGTGTGTGAGGGTCTTGGCCTCTACGATEST: gi|211060681|gb|FL415617.1|FL415617
genomic: CTTTGATGCTTAACAGTGTAATACTGGTACTTGCCAATAAGCAAGATATGgtgagccaac ... acttgtttagAAAGGGGCAATGACACCAATGGAGGTGTGTGAGGGTCTTGGCCTCTACGAT
EST: CTTTGATGCTTAACAGTGTAATACTGGTACTTGCCAATAAGCAAGATATG AAAGGGGCAATGACACCAATGGAGGTGTGTGAGGGTCTTGGCCTCTACGAT
genomic: CTTTGATGCTTAACAGTGTAATACTGGTACTTGCCAATAAGCAAGATATGgtgagccaac ... acttgtttagAAAGGGGCAATGACACCAATGGAGGTGTGTGAGGGTCTTGGCCTCTACGAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCAATAATCAAAGATCCTTTGATGCTTAACAGTGTAATACTGGTACTTGCCAATAAGCAAGATATGgtgagccaaccacacttgactccttctaacacgaagattcctgaaaatgaatagttactcaaccatgcaaacactgttttgatgtatttatatctagctg
- - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaaatgaa