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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTCGTGGTTTCCTTCTCAACTTTGGCGTGTACTATGCTACTAGGGCTGCACTAGGTCTTACATTCCAATGGAGgtaaatagtcactggaaatttctttggaactgtttctgcataaagggtatatttagctattccgtaatccatgtcccttacctagcagtagtaaagttgtgcttcatctactgacattcattcagagatgaacatcatatttaacctgtttggtatttttatatatgcag

Basic information

species Zea mays
transcript GRMZM2G113476_T01
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G113476_T03 (Zea mays), 5'ss of exon 5
lower sequence: LOC_Os07g38850.1 (Oryza sativa), 5'ss of exon 5
GTTCGTGGTTTCCTTCTCAACTTTGGCGTGTACTATGCTACTAGGGCTGCACTAGGTCTTACATTCCAATGGAGgtaaa-tagtcactggaaatttctttggaactgtttctgcataaagggtatatttagctattccgtaatccatgtcccttacctagcag--tagtaaa-gttgtgcttcatctactgacattca--ttcagagatgaacatcatatttaac-ctgtttggtatttttatatatgcag
|| |||||||| |||||||||||||| ||||||||||||||||| || ||||| ||||||||||||||||||||||||| ||||||| ||||| ||||||     || ||   ||  |    |    ||   | ||   || |  || |||  | |||| ||   | ||||| ||| || | |||||  |  ||  ||  ||||||||||| ||| |||| |||  |  | || ||| ||| ||| |||||
GTCCGTGGTTTTCTTCTCAACTTTGGTGTGTACTATGCTACTAGAGCAGCACTGGGTCTTACATTCCAATGGAGgtaaaatagtcaccggaaaattcttta----tgcttaatcagtaccaattagctttatttttagatattagatatcctctgcctatcaaattggtaaaagttctgttacatctcattgcagacagattcagagatgatcattatatctaatgccatatgatatctttctatctgcag

upper sequence: GRMZM2G113476_T03 (Zea mays), 5'ss of exon 5
lower sequence: AT3G11945.1 (Arabidopsis thaliana), 5'ss of exon 5
GTTCGTGGTTTCCTTCTCAACTTTGGCGTGTACTATGCTACTAGGGCTGCACTAGGTCTTACATTCCAATGGAGgtaaatagtcac-tggaaatttctttggaactgtttctgcataa-agggtatatttagctattccgtaatccatgtcccttacctagcagtagtaaagttgtgcttcatctactgacattcattcagagatgaacatcatatttaacctgtttggtatttttatatatgcag
|| || ||||||||||| |||||||| |||||| ||||||| || ||||| || || ||| |||| || |||||||   ||||||  || | |   |||   ||     ||   |||| ||| |  | || || || |    ||  ||     ||   ||   ||     |                                                                           
GTACGAGGTTTCCTTCTTAACTTTGGTGTGTACCATGCTACAAGAGCTGCTCTTGGACTTCCATTTCAGTGGAGgttggtagtcaaatgcacaaaacttaataaacaggtcgtaataataggatggactttgc-atacttgtatggatagagttttaatatatgtgagggaccaa-----------------------------------------------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|76922521|gb|DV169042.1|DV169042
EST:     GGCGTGTACTATGCTACTAGGGCTGCACTAGGTCTTACATTCCAATGGAG                         CTCCCCTGTTGCTTTCATTACATGCTTCGTGACACTATTTGCTTTGGTCAT
genomic: GGCGTGTACTATGCTACTAGGGCTGCACTAGGTCTTACATTCCAATGGAGgtaaatagtc ... atatatgcagCTCCCCTGTTGCTTTCATTACATGCTTCGTGACACTATTTGCTTTGGTCAT