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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTACTGATATGCCGCAACGAAGCAGAAAAATGCTTGATAGAGACTTCAATCAACTCCATACGAATAAGCATGAAGgtacactggagagctttgtgggatttttcaatggttattggggtatcagtgctgctatacatttggcatattatttggacgctactgtgatttgatgtat...

Basic information

species Zea mays
transcript GRMZM2G112015_T01
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G112015_T01 (Zea mays), 5'ss of exon 5
lower sequence: LOC_Os03g63090.2 (Oryza sativa), 5'ss of exon 5
GTACTGATATGCCGCAACGAAGCAGAAAAATGCTTGATAGAGACTTCAATCAACTCCATACGAATAAGCATGAAGgtacactggagagctttgtgggatttttcaatggttattggggt---atcagt--gctgctatacatttggcatattatttggacgctactgtgatttgatgtat-----
|| || || ||||| || ||||||||||| || ||||||||||||||||||||||| || || || ||||||||||||  |  || |   |  | |||| || | ||| |||||||| |   ||||||       |   ||| ||| |||  ||    | | |  | |  |||  ||| |     
GTGCTCATTTGCCGTAATGAAGCAGAAAAGTGTTTGATAGAGACTTCAATCAACTCTATTCGTATTAGCATGAAGgtaatcatgaaattatgattggatattactatgcttattgggataatatcagtcaatcatttgtcatctggtataccatc-atatgtttttctc-tttattgtttgacag

upper sequence: GRMZM2G112015_T01 (Zea mays), 5'ss of exon 5
lower sequence: EFJ12297 (Selaginella moellendorffii), 5'ss of exon 4
GTACTGATATGCCGCAACGAAGCAGAAAAATGCTTGATAGAGACTTCAATCAACTCCATACGAATAAGCATGAAGgtacactggagagctttgtgggatttttcaatggttattggggtatcagtgctgctatacatttggcatattatttggacgctactgtgatttgatgtat
 |  | || ||||| ||||||||||||||||||||||| || || || ||||||||| | ||||| ||||| ||||||  |    |      |  | |   | |   ||  ||     |    | || |                                              
ATCTTAATCTGCCGTAACGAAGCAGAAAAATGCTTGATTGAAACGTCGATCAACTCCCTGCGAATCAGCATCAAGgtaagc----gcatccagaagaagcatgc---gggcatgaaaatgaatgcgcag----------------------------------------------