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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGTACTCATTAGACCACATCCTGCCATTTGGAGGCTAGTTCATGGGATGGCAGTTGTTTACCTTGTCGCCCTCACTTTCTTGCTTTTCCAGgtgaatgcagtttttcattattttaaagattatttcactgcatgaactgtcaatagttttgcgttctattctattttatttatattaagcaaatctttat...

Basic information

species Zea mays
transcript GRMZM2G110834_T01
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G110834_T02 (Zea mays), 5'ss of exon 4
lower sequence: LOC_Os01g02890.1 (Oryza sativa), 5'ss of exon 4
TGTACTCATTAGACCACATCCTGCCATTTGGAGGCTAGTTCATGGGATGGCAGTTGTTTACCTTGTCGCCCTCACTTTCTTGCTTTTCCAGgtgaatgcagtttttcattatt-ttaaagattatttcactgca--tgaactgtcaatagttttgcgtt-ctattctattttatttatattaagcaaatctttat
|||||| |||||||||||||||||||||||| |||| || || ||||||||||||||||||||||| || || ||||| |||||||||||||| | | ||| ||||  |||||  |   | | |   || |     || |   |  ||| |  ||  ||  ||    |||  |||  | |||      | |||||
TGTACTTATTAGACCACATCCTGCCATTTGGCGGCTGGTCCACGGGATGGCAGTTGTTTACCTTGTTGCTCTAACTTTTTTGCTTTTCCAGgtaagtacagctttttcttattactcttgctcaacacatttttattggatcattgatattcatggattattaaggcattgcattctt-ttactt---tttttat

upper sequence: GRMZM2G110834_T02 (Zea mays), 5'ss of exon 4
lower sequence: GLYMA10G41430.1 (Glycine max), 5'ss of exon 5
TGTACTCATTAGACCACATCCTGCCATTTGGAGGCTAGTTCATGGGATGGCAGTTGTTTACCTTGTCGCCCTCACTTTCTTGCTTTTCCAGgtgaatgcagtttttcattattttaaagattatttcactgcatgaactgtcaatagttttgcgttctattctattttatttatattaagcaaatctttat------
 || || ||||| ||||||||||| |||||| |  | |||||||| ||||| |||||||||||||| |||||||| || |||||||| |||||   |       |   | | |||||  ||| |||   ||  | || | | | ||||||||       |   ||||||  | | |  ||   || ||| |      
GGTTCTTATTAGGCCACATCCTGCAATTTGGCGCTTGGTTCATGGAATGGCTGTTGTTTACCTTGTTGCCCTCACATTTTTGCTTTTTCAGgttggtct--ccatgtctcaatttaactattcttt--ttgtgtaaagtttaagtagttttgtcaagcgtaa-attttacatttttgtagtgtat-tttgtagcaga

upper sequence: GRMZM2G110834_T02 (Zea mays), 5'ss of exon 4
lower sequence: GLYMA20G25830.2 (Glycine max), 5'ss of exon 7
TGTACTCATTAGACCACATCCTGCCATTTGGAGGCTAGTTCATGGGATGGCAGTTGTTTACCTTGTCGCCCTCACTTTCTTGCTTTTCCAGgtgaatgcagtttttcattattttaaagattatttcactgcatgaactgtcaatagttttgcgttctattctattttatttatattaagcaaatctttat-----
 || || ||||| ||||||||||| |||||| |  | |||||||| ||||| ||||| ||||| || |||||||| || |||||||| |||||   |       |   | | ||||   ||| |||   ||  | || | | | || |||||       ||  | |||   | | |  ||   || |||       
GGTTCTTATTAGGCCACATCCTGCAATTTGGCGCTTGGTTCATGGCATGGCTGTTGTATACCTAGTTGCCCTCACATTTTTGCTTTTTCAGgttggttt--ccatgtctcaatttatctattcttt--gtgtgtaaagtttaagtaattttgt-caagcttaaactttgcatttttgtagtgtatttttgctctag

upper sequence: GRMZM2G110834_T02 (Zea mays), 5'ss of exon 4
lower sequence: Vv01s0011g04370.t01 (Vitis vinifera), 5'ss of exon 5
TGTACTCATTAGACCACATCCTGCCATTTGGAGGCTAGTTCATGGGATGGCAGTTGTTTACCTTGTCGCCCTCACTTTCTTGCTTTTCCAGgtgaatgcagttttt---------cattattttaa--agattatttcactgcatgaactgtcaatagttttgcgttctattctattttatttatattaagcaaatctttat
 ||||| ||||| |||||||| || |||||| | ||||||||||||||||| ||  ||||||||||    ||||| || ||||||||||||||        ||||          |||| || |||  || || | | | ||||||   |||| |||    ||| |     | ||| | || ||| | |   |         
GGTACTTATTAGGCCACATCCAGCAATTTGGCGACTAGTTCATGGGATGGCGGTCATTTACCTTGTTTGTCTCACATTTTTGCTTTTCCAGgttggctttcttttctaaagctcacattcttctaataagtttgtgtgagtgcatgtg-tgtccatatgcatgcatgtgtatgtatat-atgtatgtaagtta---------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|74240999|gb|DT648913.1|DT648913
EST:     ATGGGATGGCAGTTGTTTACCTTGTCGCCCTCACTTTCTTGCTTTTCCAG                         ACTCGTGATGATGCTAGGCAATTCATGAAGTATCTTCATCCTGATCTTGGT
genomic: ATGGGATGGCAGTTGTTTACCTTGTCGCCCTCACTTTCTTGCTTTTCCAGgtgaatgcag ... tgttttgcagACTCGTGATGATGCTAGGCAATTCATGAAGTATCTTCATCCTGATCTTGGT
EST: gi|76910093|gb|DV163697.1|DV163697
EST:     ATGGGATGGCAGTTGTTTACCTTGTCGCCCTCACTTTCTTGCTTTTCCAG                         ACTCGTGATGATGCTAGGCAATTCATGAAGTATCTTCATCCTGATCTTGGT
genomic: ATGGGATGGCAGTTGTTTACCTTGTCGCCCTCACTTTCTTGCTTTTCCAGgtgaatgcag ... tgttttgcagACTCGTGATGATGCTAGGCAATTCATGAAGTATCTTCATCCTGATCTTGGT