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AGAGCCAACGATCTTGTGAAGAATAAGATCCATCCAACCTCTATAATCAGTGGCTACAGGgtacgttatcaagtctcgctgtggctgtagtagtatttgaattttaactggtcatttcacaagatgactatagcttacctttctggaatgtttttccttcatattctaccag
species | Zea mays |
transcript | GRMZM2G110626_T01 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: ATCTTGTGAAGAATAAGATCCATCCAACCTCTATAATCAGTGGCTACAGG CTTGCTATGCGTGAASC-TGCAAATATGTTGAGGAAAAEST: gi|211160352|gb|FL101552.1|FL101552
genomic: ATCTTGTGAAGAATAAGATCCATCCAACCTCTATAATCAGTGGCTACAGGgtacgttatc ... attctaccagCTTGCTATGCGTGAAGCCTGCAAATATGTTGAGGAAAA
EST: ATCTTGTGAAGAATAAGA-CCATCCAACCTCTATAATCAGTGGCTACAGG CTTGCTATGCGTGAAGCEST: gi|32795745|gb|CD947981.1|CD947981
genomic: ATCTTGTGAAGAATAAGATCCATCCAACCTCTATAATCAGTGGCTACAGGgtacgttatc ... attctaccagCTTGCTATGCGTGAAGC
EST: GATCCGTCCAACCTCTATAATCAGTGGCTACAGG CTTGCTATGCGTGAAGCCTGCAAATATGTTGAGGAAAAATTGGCAGTCAAGEST: gi|211158771|gb|FL101550.1|FL101550
genomic: GATCCATCCAACCTCTATAATCAGTGGCTACAGGgtacgttatc ... attctaccagCTTGCTATGCGTGAAGCCTGCAAATATGTTGAGGAAAAATTGGCAGTCAAG
EST: ATCTTGTGAAGAATAAGATCCATCCAACCTCTATAATCAGTGGCTACAGG CTTGCTATGCGTGAAGCCTGCAAATATGTTGAGGAAAAATTGGCAGTCAAGEST: gi|211160357|gb|FL101557.1|FL101557
genomic: ATCTTGTGAAGAATAAGATCCATCCAACCTCTATAATCAGTGGCTACAGGgtacgttatc ... attctaccagCTTGCTATGCGTGAAGCCTGCAAATATGTTGAGGAAAAATTGGCAGTCAAG
EST: ATCTTGTGAAGAATAAGATCCATCCAACCTCTATAATCAGTGGCTACAGG CTTGCTATTGCGTGAAGEST: gi|211160351|gb|FL101551.1|FL101551
genomic: ATCTTGTGAAGAATAAGATCCATCCAACCTCTATAATCAGTGGCTACAGGgtacgttatc ... attctaccagCTTGCTAT-GCGTGAAG
EST: ATCTTGTGAAGAATAAGATCCATCCAACCTCTATAATCAGTGGCTACAGG CTTGCTATGCGTGAAG
genomic: ATCTTGTGAAGAATAAGATCCATCCAACCTCTATAATCAGTGGCTACAGGgtacgttatc ... attctaccagCTTGCTATGCGTGAAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGAGCCAACGATCTTGTGAAGAATAAGATCCATCCAACCTCTATAATCAGTGGCTACAGGgtacgttatcaagtctcgctgtggctgtagtagtatttgaattttaactggtcatttcacaagatgactatagcttacctttctggaatgtttttccttcatattctaccag
- - - - - - - - TGAAGA