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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CATCTACCTAGTATCTCATTACTCAATTCGTCACTGGTCAGCATTGAGTGGTGTGGATACTGAACTTATCAACGTCCAAGGACATGTGGCACCAAGGGAGgtacaataacattttctttcatgttgtgtgttgtcttcccatcctctcttgttattcaacttatactgatgacaggcattgttgtacag

Basic information

species Zea mays
transcript GRMZM2G109039_T03
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G109039_T02 (Zea mays), 5'ss of exon 4
lower sequence: LOC_Os02g48964.1 (Oryza sativa), 5'ss of exon 5
CATCTACCTAGTATCTCATTACTCAATTCGTCACTGGTCAGCATTGAGTGGTGTGGATACTGAACTTATCAACGTCCAAGGACATGTGGCACCAAGGGAGgtacaataacattttctttcatgttgtgtg-----ttgtcttcccatcctctcttgttattcaacttatactgatgacaggcattgttgt----acag
  ||||  || | || |||| |||  ||| ||| ||||| ||| |||||||| | ||||| || ||||| || |||||||||||||||||||| |||||||||   || | | || ||   ||||   |      || | | | |  | |||    ||  |  | |  || |||||       || || |    ||||
TGTCTATTTAATGTCACATTTCTCTGTTCTTCATTGGTCGGCACTGAGTGGTCTTGATACCGAGCTTATGAATGTCCAAGGACATGTGGCACCCAGGGAGgtatggtaccttctttttctttgttccatcaatttttatttactctgcttctaagttttatgtattagtattgatgtttcatgtttttcttattacag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|60342865|gb|DN209838.1|DN209838
EST:     GTGTGGATACTGAACTTATCAACGTCCAAGGACATGTGGCACCAAGGGAG                         AAGCATGCAGGAAGTTTATTAGAGGGGTTTTATCAGACTCAAGTTAGTACC
genomic: GTGTGGATACTGAACTTATCAACGTCCAAGGACATGTGGCACCAAGGGAGgtacaataac ... tgttgtacagAAGCATGCAGGAAGTTTATTAGAGGGGTTTTATCAGACTCAAGTTAGTACC