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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGCTTGATGTCCTTGGCCCTCCATATGATGATGGCAGCGGAAGGCACTGCCAGTACTACAATGTCCGTTCCTCTGCAATTTCTGTTGgtaagatttttacctgagttaaatggccgaatattactatattaggtgttacagtattggaatattgttgttgttttgttaaccaactgttttccttgac...

Basic information

species Zea mays
transcript GRMZM2G108898_T02
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G108898_T02 (Zea mays), 5'ss of exon 5
lower sequence: LOC_Os01g09030.1 (Oryza sativa), 5'ss of exon 4
-------------TGCTTGATGTCCTTGGCCCTCCATATGATGATGGCAGCGGAAGGCACTGCCAGTACTACAATGTCCGTTCCTCTGCAATTTCTGTTGgtaagattt-ttacctgagttaaat--ggccgaatatta---ctatattaggtgttacag------tattggaatattgttgttgttttgttaaccaactgttttccttgac
             | ||||||||||||||||| |||||||| |||||||| || |||||||||||| ||||||| |||  ||||||||||  ||||| |||||  ||||  || | |||||| ||  |   | ||||     | | |||   | ||  ||       |||   ||||  ||| | |||    || | | |            
ACTGCTTGTGCTGTTCTTGATGTCCTTGGCCCACCATATGACGATGGCAGTGGGAGGCACTGCCAGCACTACAACGTCTCTTCCTCTGCACCTTCTGCTGgtactatttgctaaccgagttatatctgcttgtatatagggtccacattgtatcttttaggttttacatttatatataattgctatttcacaaatctatt------------