1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
GGAAAGAGAACCAAGCTGTCAACACATCCCACTTTATGTAATAAGAGGCAGCAGATCAAGCAAGGATCAAATCCCCACTGTGCAACTACTACTGCTGAAGgtaacacatacaaaccgtaatgatatatcaatacacttggtaaatttcaaattatacaacttatttcataaaaaaatgaacttactttgagggaggattataaaaaaaaactgaaagaatcgtactcttgttctgggcag
species | Zea mays |
transcript | GRMZM2G107985_T02 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: GCAGATCAAGCAAGGATCAAATCCCCACTGTGCAACTACTACTGCTGAAG CACAAGGATCAAAATGGACCAAGTATTTGGACACGAGCCGTTTTGGTGGGAEST: gi|78024477|gb|DV492864.1|DV492864
genomic: GCAGATCAAGCAAGGATCAAATCCCCACTGTGCAACTACTACTGCTGAAGgtaacacata ... ttctgggcagCACAAGGATCAAAATGGACCAAGTATTTGGACACGAGCCGTTTTGGTGGGA
EST: GCAGATCAAGCAAGGATCAAGTCCCCACTGTGCAACTACTACTGCTGAAG CACAAGGATCAAAATGGACCAAGTATTTGGACACGAGCCGTTTTGGTGGGAEST: gi|76912082|gb|DV164566.1|DV164566
genomic: GCAGATCAAGCAAGGATCAAATCCCCACTGTGCAACTACTACTGCTGAAGgtaacacata ... ttctgggcagCACAAGGATCAAAATGGACCAAGTATTTGGACACGAGCCGTTTTGGTGGGA
EST: GCAGATCAAGCAAGGATCAAATCCCCACTGTGCAACTACTACTGCTGAAG CACAAGGATCAAAATGGACCAAGTATTTGGACACGAGCCGTTTTGGTGGGAEST: gi|78120583|gb|DV538967.1|DV538967
genomic: GCAGATCAAGCAAGGATCAAATCCCCACTGTGCAACTACTACTGCTGAAGgtaacacata ... ttctgggcagCACAAGGATCAAAATGGACCAAGTATTTGGACACGAGCCGTTTTGGTGGGA
EST: GCAGATCAAGCAAGGATCAAATCCCCACTGTGCAACTACTACTGCTGAAG CACAAGGATCAAAATGGACCAAGTATTTGGACACGAGCCGTTTTGGTGGGAEST: gi|88751488|gb|DY535629.1|DY535629
genomic: GCAGATCAAGCAAGGATCAAATCCCCACTGTGCAACTACTACTGCTGAAGgtaacacata ... ttctgggcagCACAAGGATCAAAATGGACCAAGTATTTGGACACGAGCCGTTTTGGTGGGA
EST: GCAGATCAAGCAAGGATCAAATCCCCACTGTGCAACTACTACTGCTGAAG CACAAGGATCAAAATGGACCAAGTATTTGGACTCGAGCCGTTTTGGTGGGGEST: gi|78074278|gb|DV502712.1|DV502712
genomic: GCAGATCAAGCAAGGATCAAATCCCCACTGTGCAACTACTACTGCTGAAGgtaacacata ... ttctgggcagCACAAGGATCAAAATGGACCAAGTATTTGGACACGAGCCGTTTTGGTGGGA
EST: GCAGATCAAGCAAGGATCAAATCCCCACTGTGCAACTACTACTGCTGAAG CACAAGGATCAAAATGGACCAAGTATTTGGACACGAGCCGTTTTGGTGGGAEST: gi|71759770|gb|DR957707.1|DR957707
genomic: GCAGATCAAGCAAGGATCAAATCCCCACTGTGCAACTACTACTGCTGAAGgtaacacata ... ttctgggcagCACAAGGATCAAAATGGACCAAGTATTTGGACACGAGCCGTTTTGGTGGGA
EST: GCAGATCAAGCAAGGATCAAATCCCCACTGTGCAACTACTACTGCTGAAG CACAAGGATCAAAATGGACCAAGTATTTGGACACGAGCCGTTTTGGTGGGAEST: gi|74234638|gb|DT642552.1|DT642552
genomic: GCAGATCAAGCAAGGATCAAATCCCCACTGTGCAACTACTACTGCTGAAGgtaacacata ... ttctgggcagCACAAGGATCAAAATGGACCAAGTATTTGGACACGAGCCGTTTTGGTGGGA
EST: GCAGATCAAGCAAGGATCAAATCCCCACTGTGCAACTACTACTGCTGAAG CACAAGGATCAAAATGGACCAAGTATTTGGACACGAGCCGTTTTGGTGGGAEST: gi|24768229|gb|CA403358.1|CA403358
genomic: GCAGATCAAGCAAGGATCAAATCCCCACTGTGCAACTACTACTGCTGAAGgtaacacata ... ttctgggcagCACAAGGATCAAAATGGACCAAGTATTTGGACACGAGCCGTTTTGGTGGGA
EST: GCAGATCAAGCAAGGATCAAATCCCCACTGTGCAACTACTACTGCTGAAG CACAAGGATCAAAATGGACCAAGTATTTGGACACGAGCCGTTTTGGTGGGA
genomic: GCAGATCAAGCAAGGATCAAATCCCCACTGTGCAACTACTACTGCTGAAGgtaacacata ... ttctgggcagCACAAGGATCAAAATGGACCAAGTATTTGGACACGAGCCGTTTTGGTGGGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGAAAGAGAACCAAGCTGTCAACACATCCCACTTTATGTAATAAGAGGCAGCAGATCAAGCAAGGATCAAATCCCCACTGTGCAACTACTACTGCTGAAGgtaacacatacaaaccgtaatgatatatcaatacacttggtaaatttcaaattatacaacttatttcataaaaaaatgaacttactttgagggaggattataaaaaaaaactgaaagaatcgtactcttgttctgggcag
- - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG