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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCAAAACGCAAGGTCATCAAGCATAGCAAGCTTGAGAAGGACAAAGAGTTATTTCAACTAGCCCAGCAATACCACAAAGTGGTTGCAGAAAGGGATCAAGgttagtttaatgaacatgtgattggtgtacagttaaatttaatgagtgcatgcctccctttgtgattctcctttgtatcttcaccgacaaacatgtgtgt...

Basic information

species Zea mays
transcript GRMZM2G107731_T02
intron # 5
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|71436912|gb|DR817962.1|DR817962
EST:     ATTTCAACTAGCCCAGCAATACCACAAAGTGGTTGCAGAAAGGGATCAAG                         CCATTGCAGTCAAAGATAGACTAGAATCTCTTTGTAGGGAATTTCAGCGTC
genomic: ATTTCAACTAGCCCAGCAATACCACAAAGTGGTTGCAGAAAGGGATCAAGgttagtttaa ... gtccttgcagCCATTGCAGTCAAAGATAGACTAGAATCTCTTTGTAGGGAATTTCAGCGTC
EST: gi|78116277|gb|DV534664.1|DV534664
EST:     ATTTCAACTAGCCCAGCAATACCACAAAGTGGTTGCAGAAAGGGATCAAG                         CCATTGCAGTCAAAGATAGAACTAGA-TCTCTTTGTAAGGAATTTTCACCG
genomic: ATTTCAACTAGCCCAGCAATACCACAAAGTGGTTGCAGAAAGGGATCAAGgttagtttaa ... gtccttgcagCCATTGCAGTCAAAGATAGA-CTAGAATCTCTTTGTAGGGAATTT-CAGCG
EST: gi|149081200|gb|EE170309.2|EE170309
EST:     ATTTCAACTAGCCCAGCAATACCACAAAGTGGTTGCAGAAAGGGATCAAG                         CCATTGCAGTCAAAGATAGACTAGAATCTCTTTGTAGGGAATTTCAGCGTC
genomic: ATTTCAACTAGCCCAGCAATACCACAAAGTGGTTGCAGAAAGGGATCAAGgttagtttaa ... gtccttgcagCCATTGCAGTCAAAGATAGACTAGAATCTCTTTGTAGGGAATTTCAGCGTC
EST: gi|149027108|gb|EE046399.2|EE046399
EST:     ATTTCAACTAGCCCAGCAATACCACAAAGTGGTTGCAGAAAGGGATCAAG                         CCATTGCAGTCAAAGATAGACTAGAATCTCTTTGTAGGGAATTTCAGCGTC
genomic: ATTTCAACTAGCCCAGCAATACCACAAAGTGGTTGCAGAAAGGGATCAAGgttagtttaa ... gtccttgcagCCATTGCAGTCAAAGATAGACTAGAATCTCTTTGTAGGGAATTTCAGCGTC
EST: gi|148994670|gb|EE034191.2|EE034191
EST:     ATTTCAACTAGCCCAGCAATACCACAAAGTGGTTGCAGAAAGGGATCAAG                         CCATTGCAGTCAAAGATAGACTAGAATCTCTTTGTAGGGAATTTCAGCGTC
genomic: ATTTCAACTAGCCCAGCAATACCACAAAGTGGTTGCAGAAAGGGATCAAGgttagtttaa ... gtccttgcagCCATTGCAGTCAAAGATAGACTAGAATCTCTTTGTAGGGAATTTCAGCGTC
EST: gi|148961119|gb|EE011825.2|EE011825
EST:     ATTTCAACTAGCCCAGCAATACCACAAAGTGGTTGCAGAAAGGGATCAAG                         CCATTGCAGTCAAAGATAGACTAGAATCTCTTTGTAGGGAATTTCAGCGTC
genomic: ATTTCAACTAGCCCAGCAATACCACAAAGTGGTTGCAGAAAGGGATCAAGgttagtttaa ... gtccttgcagCCATTGCAGTCAAAGATAGACTAGAATCTCTTTGTAGGGAATTTCAGCGTC
EST: gi|149071351|gb|EE159746.2|EE159746
EST:     ATTTCAACTAGCCCAGCAATACCACAAAGTGGTTGCAGAAAGGGATCAAG                         CCATTGCAGTCAAAGATAGACTAGAATCT
genomic: ATTTCAACTAGCCCAGCAATACCACAAAGTGGTTGCAGAAAGGGATCAAGgttagtttaa ... gtccttgcagCCATTGCAGTCAAAGATAGACTAGAATCT
EST: gi|31354731|gb|CD439088.1|CD439088
EST:     ATTTCAACTAGCCCAGCAATACCACAAAGTGGTTGCAGAAAGGGATCAAG                         CCATTGCAGTCAAAGATAGACTAGAATCTCTTTGTAGGGAATTTCAGCGTC
genomic: ATTTCAACTAGCCCAGCAATACCACAAAGTGGTTGCAGAAAGGGATCAAGgttagtttaa ... gtccttgcagCCATTGCAGTCAAAGATAGACTAGAATCTCTTTGTAGGGAATTTCAGCGTC
EST: gi|60358220|gb|DN225193.1|DN225193
EST:     ATTTCAACTAGCCCAGCAATACCACAAAGTGGTTGCAGAAAGGGATCAAG                         CCATTGCAGTCAAAGATAGACTAGAATCTCTTTGTAGGGAATTTCAGCGTC
genomic: ATTTCAACTAGCCCAGCAATACCACAAAGTGGTTGCAGAAAGGGATCAAGgttagtttaa ... gtccttgcagCCATTGCAGTCAAAGATAGACTAGAATCTCTTTGTAGGGAATTTCAGCGTC
EST: gi|91055771|gb|EB166189.1|EB166189
EST:     ATTTCAACTAGCCCAGCAATACCACAAAGTGGTTGCAGAAAGGGATCAAG                         CCATTGCAGTCAAAGATAGACTAGAATCTCTTTGTAGGGAATTTCAGCGTC
genomic: ATTTCAACTAGCCCAGCAATACCACAAAGTGGTTGCAGAAAGGGATCAAGgttagtttaa ... gtccttgcagCCATTGCAGTCAAAGATAGACTAGAATCTCTTTGTAGGGAATTTCAGCGTC