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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTATGGAAGCGGAAAAGAAGATAGCCCTCTATGTGATGTGCCTGGATTTGAAAACACTAGAATGAAACTCCTGAGACATGTTTCTTTTGTTGATTGCCCGgtatgataaagtatttaccacttttcttgtagcattattctgttgcattagtgtttaaatatcccgggcctaattatattgtacctaccacctaaatcct...

Basic information

species Zea mays
transcript GRMZM2G107654_T01
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G107654_T01 (Zea mays), 5'ss of exon 5
lower sequence: LOC_Os12g07740.1 (Oryza sativa), 5'ss of exon 5
CTATGGAAGCGGAAAAGAAGATAGCCCTCTATGTGATGTGCCTGGATTTGAAAACACTAGAATGAAACTCCTGAGACATGTTTCTTTTGTTGATTGCCCGgtatgataaagtatttaccacttttcttgtagcattattctgttgcattagtgtttaaatatcccgggcctaattatattgtacctaccaccta-aatcct
 ||||||||||||||||||||||||||||  |||||||||||||| |||||||||||||| ||||| || |||||||||||||||||||||||||| |||||||||| || |   |  | | | ||   ||  | |  ||| |||    |  |  | |  |  |       |  | || ||    | |    |  ||| | 
TTATGGAAGCGGAAAAGAAGATAGCCCTCACTGTGATGTGCCTGGGTTTGAAAACACTAGGATGAAGCTACTGAGACATGTTTCTTTTGTTGATTGTCCGgtatgatgaaatccctttc-cctgtcaaatatgaatcctctcttgagacacggcctgatcagtctacctgaatgtttaatgatattgctttatgcaattca

upper sequence: GRMZM2G107654_T01 (Zea mays), 5'ss of exon 5
lower sequence: LOC_Os12g41400.1 (Oryza sativa), 5'ss of exon 5
CTATGGAAGCGGAAAAGAAGATAGCCCTCTATGTGATGTGCCTGGATTTGAAAACACTAGAATGAAACTCCTGAGACATGTTTCTTTTGTTGATTGCCCGgtatgataaagtatttaccacttttcttgtagcattattctgttgcattagtgtttaaatatcccgggcctaattatattgtacctaccacctaaatcct--
 |||||||| |||||||||||||||||||  |||||||||||||| |||||||||||||| ||||| || |||||||||||||||||||||||||| ||||||||||| |    |     | ||| ||| |  ||     ||||   ||  |    | || || | |  | | ||||  | | |||      |  ||  |  
TTATGGAAGTGGAAAAGAAGATAGCCCTCACTGTGATGTGCCTGGGTTTGAAAACACTAGGATGAAGCTACTGAGACATGTTTCTTTTGTTGATTGTCCGgtatgatataaacctcttaccctttgttgca-tatatgaatgttctttttctcaagacatttctctgagc-atttattgtcttcctgaatgtttcatgatat

upper sequence: GRMZM2G107654_T01 (Zea mays), 5'ss of exon 5
lower sequence: GLYMA15G40750.1 (Glycine max), 5'ss of exon 5
CTATGGAAGCGGAAAAGAAGATAGCCCTCTATGTGATGTGCCTGGATTTGAAAACACTAGAATGAAACTCCTGAGACATGTTTCTTTTGTTGATTGCCCGgtatgataaagtatttaccacttttcttgtagcattattctgt-tgcattagtgtt-taaatatcccgggcctaattatattgtacctaccacctaaatcct-
 |||||||| ||||| |||||||| ||| | ||||||||||| |||||||||||||  |  |||||| | |||||||||||||| ||||| ||||| ||||||   |   | | |||| | || |  | |||  || || | |    | |   ||| || |||    ||   |   |  |   |       |  || ||    
TTATGGAAGTGGAAAGGAAGATAGTCCTATGTGTGATGTGCCAGGATTTGAAAACAGCAAGATGAAATTGCTGAGACATGTTTCATTTGTGGATTGTCCGgtaaagtcctgaacttac-atttgttatttagggttgttttatgcataatttcgttatagataatatggatatgcctgcacatt--tggttatatatattgag

upper sequence: GRMZM2G107654_T01 (Zea mays), 5'ss of exon 5
lower sequence: AT1G04170.1 (Arabidopsis thaliana), 5'ss of exon 5
CTATGGAAGCGGAAAAGAAGATAGCCCTCTATGTGATGTGCCTGGATTTGAAAACACTAGAATGAAACTCCTGAGACATGTTTCTTTTGTTGATTGCCCGgtatgataaagtatttaccacttttcttgtagcattattctgttgcattagtgtttaaatatcccgg-gcctaattatat--tgtacctaccacctaaatcct
||| ||||| ||||| ||||| |  ||    |||||||| || |||||||||||| | |  ||||||||  |||| ||||| || || ||||||||||||||||||| |  |  |||||  | |  || |  | | |||   |  ||||    ||| |   |    | |  |||  || |  |||  | |  | ||      |
CTACGGAAGTGGAAAGGAAGACACTCCCAATTGTGATGTCCCCGGATTTGAAAACTCCAAGATGAAACTATTGAGGCATGTCTCATTCGTTGATTGCCCGgtatgatgagtt--ttaccgttatctttatt-cttcattaattaccattttcatttgatagtataagtgtataaccatttcatgtgtcaatgagctgttcgtt

upper sequence: GRMZM2G107654_T01 (Zea mays), 5'ss of exon 5
lower sequence: AT2G18720.1 (Arabidopsis thaliana), 5'ss of exon 3
CTATGGAAGCGGAAAAGAAGATAGCCCTCTATGTGATGTGCCTGGATTTGAAAACACTAGAATGAAACTCCTGAGACATGTTTCTTTTGTTGATTGCCCGgtatgataaagtatttaccacttttcttgtagcattattctgttgcattagtgtttaaatatcc-cgggcctaattatattgtacctaccacctaaatcct
 |  || || || |||||||| | |||    ||||||||  |||||  ||| ||    |  |||||||| || |||||||| || ||||||||||||||||||| | |     |||| |||| ||  |  | |    || |||  |   | | | || || |    | |     || | |  |   ||             
TTTCGGGAGTGGCAAAGAAGACAACCCAAGTTGTGATGTCTCTGGACATGAGAAGTACAAGATGAAACTACTAAGACATGTCTCATTTGTTGATTGCCCGgtataaaatgagttttaacactatttctaaatc----ttttgtaac--cattttctatatgttaatgaggtgttttgtgtgttgattag------------

upper sequence: GRMZM2G107654_T01 (Zea mays), 5'ss of exon 5
lower sequence: Vv10s0042g01220.t01 (Vitis vinifera), 5'ss of exon 4
CTATGGAAGCGGAAAAGAAGATAGCCCTCTATGTGATGTGCCTGGATTTGAAAACACTAGAATGAAACTCCTGAGACATGTTTCTTTTGTTGATTGCCCGgtatgataaagtatttaccacttttcttgtagcattattctgttgcattagtgtttaaatatcccgggcctaattatattgtacct-accacctaaatcct
||||||||| ||||| |||||||| ||||| |||||||||||||| |||||||||   || |||||  | ||  ||||||| || ||||| |||||||||||| | |     |  | | | | |      |    | |  | |   ||   ||  | | |   |   |   | |   |    || | |  |  |   |  |
CTATGGAAGTGGAAAGGAAGATAGTCCTCTCTGTGATGTGCCTGGGTTTGAAAACTGCAGGATGAAGTTGCTACGACATGTGTCCTTTGTAGATTGCCCGgtaaggtgtta-aaatgctaatatctagaaaatgctgtcttttgtaatgtatgaattatttctctatgatgagtatcaaatcactttaatagttttcttgt

upper sequence: GRMZM2G107654_T01 (Zea mays), 5'ss of exon 5
lower sequence: Vv13s0074g00310.t01 (Vitis vinifera), 5'ss of exon 5
CTATGGAAGCGGAAAAGAAGATAGCCCTCTATGTGATGTGCCTGGATTTGAAAACACTAGAATGAAACTCCTGAGACATGTTTCTTTTGTTGATTGCCCGgtatgataaagtatttaccacttttcttgtagcattattctgttgcattagtgtttaaatatcccgggccta-attatattgtacctaccacctaaatcct
||||||||| ||||| |||||||| || || |||||||||||||| |||||||||   || |||||  | ||| ||||||| |||||||| |||||||||||| | |     |  | | | | |      |   ||||  | |   |    ||| | |    |  ||   |  |  | ||   ||| |  |  |   |   
CTATGGAAGTGGAAAGGAAGATAGTCCACTCTGTGATGTGCCTGGTTTTGAAAACTGCAGGATGAAGTTGCTGCGACATGTATCTTTTGTAGATTGCCCGgtaaggtttta-aaatgctaatatctagaaaatgttatcttttgtaaaatatgtattatgcactaggatgtgtaccaaatcacaccaataattttgttatc

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|22542185|gb|BU092623.1|BU092623
EST:     AAAACACTAGAATGAAACTCCTGAGACATGTTTCTTTTGTTGATTGCCCG                         GGACACGACATTCTCATGGCTACAATGCTTAATGGAGCTGCTATCATGGAT
genomic: AAAACACTAGAATGAAACTCCTGAGACATGTTTCTTTTGTTGATTGCCCGgtatgataaa ... ccttgaatagGGACACGACATTCTCATGGCTACAATGCTTAATGGAGCTGCTATCATGGAT
EST: gi|31405821|gb|CD484553.1|CD484553
EST:     AAAACACTAGAATGAAACTCCTGAGACATGTTTCTTTTGTTGATTGCCCG                         GGACACGACATTCTCATGGCTACAATGCTTAATGGAGCTGCTATCATGGAT
genomic: AAAACACTAGAATGAAACTCCTGAGACATGTTTCTTTTGTTGATTGCCCGgtatgataaa ... ccttgaatagGGACACGACATTCTCATGGCTACAATGCTTAATGGAGCTGCTATCATGGAT
EST: gi|60351762|gb|DN218735.1|DN218735
EST:     AAAACACTAGAATGAAACTCCTGAGACATGTTTCTTTTGTTGATTGCCCG                         GGACACGACATTCTCATGGCTACAATGCTTAATGGAGCTGCTATCATGGAT
genomic: AAAACACTAGAATGAAACTCCTGAGACATGTTTCTTTTGTTGATTGCCCGgtatgataaa ... ccttgaatagGGACACGACATTCTCATGGCTACAATGCTTAATGGAGCTGCTATCATGGAT
EST: gi|33094733|gb|CF054727.1|CF054727
EST:     AGACATGTTTCTTTTGTTGATTGCCCG                         GGACACGACATTCTCATGGCTACAATGCTTAATGGAGCTGCTATCATGGAT
genomic: AGACATGTTTCTTTTGTTGATTGCCCGgtatgataaa ... ccttgaatagGGACACGACATTCTCATGGCTACAATGCTTAATGGAGCTGCTATCATGGAT
EST: gi|211512791|gb|FL351608.1|FL351608
EST:     AWACACTAGAATGAAWCTCCTGAGACATGTTTCTTTTGTTGATTGCCTCG                         GGACACGACATTCTCAT
genomic: AAACACTAGAATGAAACTCCTGAGACATGTTTCTTTTGTTGATTGCC-CGgtatgataaa ... ccttgaatagGGACACGACATTCTCAT
EST: gi|32934438|gb|CF039250.1|CF039250
EST:     TTGTTGATTGCCCG                         GGACACGACATTCTCATGGCTACAATGCTTAATGGAGCTGCTATCATGGAT
genomic: TTGTTGATTGCCCGgtatgataaa ... ccttgaatagGGACACGACATTCTCATGGCTACAATGCTTAATGGAGCTGCTATCATGGAT
EST: gi|32906939|gb|CF011752.1|CF011752
EST:     AGAACACTAGAATGAAACTCCTGAGACATGTTTCTTTTGTTGATTGCCCG                         GGACACGACATTCTCATGGCTACAATGCTTAATGGAGCTGCTATCATGGAT
genomic: AAAACACTAGAATGAAACTCCTGAGACATGTTTCTTTTGTTGATTGCCCGgtatgataaa ... ccttgaatagGGACACGACATTCTCATGGCTACAATGCTTAATGGAGCTGCTATCATGGAT
EST: gi|22491498|gb|BU051421.1|BU051421
EST:     AGAACACTAGAATGAAACTCCTGAGACATGTTTCTTTTGTTGATTGCCCG                         GGACACGACATTCTCATGGCTACAATGCTTAATGGAGCTGCTATCATGGAT
genomic: AAAACACTAGAATGAAACTCCTGAGACATGTTTCTTTTGTTGATTGCCCGgtatgataaa ... ccttgaatagGGACACGACATTCTCATGGCTACAATGCTTAATGGAGCTGCTATCATGGAT
EST: gi|19272597|gb|BM888853.1|BM888853
EST:     AGAACACTAGAATGAAACTCCTGAGACATGTTTCTTTTGTTGATTGCCCG                         GGACACGACATTCTCATGGCTACAATGCTTAATGGAGCTGCTATCATGGAT
genomic: AAAACACTAGAATGAAACTCCTGAGACATGTTTCTTTTGTTGATTGCCCGgtatgataaa ... ccttgaatagGGACACGACATTCTCATGGCTACAATGCTTAATGGAGCTGCTATCATGGAT
EST: gi|22473004|gb|BU037484.1|BU037484
EST:     AAAACACTAGAATGAAACTCCTGAGACATGTTTCTTTTGTTGATTGCCCG                         GGACACGACATTCTCATGG
genomic: AAAACACTAGAATGAAACTCCTGAGACATGTTTCTTTTGTTGATTGCCCGgtatgataaa ... ccttgaatagGGACACGACATTCTCATGG
EST: gi|211255911|gb|FL358702.1|FL358702
EST:     AAAACACTAGAATGAAACTCCTGAGACATGTTTCTTTTGTTGATTGCCCG                         GGACACGACATTCTCATGGCTACAATGCTTAATGGAGCTGCTATCATGGAT
genomic: AAAACACTAGAATGAAACTCCTGAGACATGTTTCTTTTGTTGATTGCCCGgtatgataaa ... ccttgaatagGGACACGACATTCTCATGGCTACAATGCTTAATGGAGCTGCTATCATGGAT
EST: gi|91876669|gb|EB406626.1|EB406626
EST:     AAAACACTAGAATGAAACTCCTGAGACATGTTTCTTTTGTTGATTGCCCG                         GGACACGACATTCTCATGGCTACAATGCTTAATGGAGCTGCTATCATGGAT
genomic: AAAACACTAGAATGAAACTCCTGAGACATGTTTCTTTTGTTGATTGCCCGgtatgataaa ... ccttgaatagGGACACGACATTCTCATGGCTACAATGCTTAATGGAGCTGCTATCATGGAT
EST: gi|78103988|gb|DV522406.1|DV522406
EST:     AAAACACTAGAATGAAACTCCTGAGACATGTTTCTTTTGTTGATTGCCCG                         GGACACGACATTCTCATGGCTACAATGCTTAATGGAGCTGCTATCATGGAT
genomic: AAAACACTAGAATGAAACTCCTGAGACATGTTTCTTTTGTTGATTGCCCGgtatgataaa ... ccttgaatagGGACACGACATTCTCATGGCTACAATGCTTAATGGAGCTGCTATCATGGAT
EST: gi|5268487|gb|AI770451.1|AI770451
EST:     AAAACACTAGAATGAAACTCCTGAGACATGTTTCTTTTGTTGATTGCCCG                         GGACACGACATTCTCATGGCTACAATGCTTAATGGAGCTGCTATCATGGAT
genomic: AAAACACTAGAATGAAACTCCTGAGACATGTTTCTTTTGTTGATTGCCCGgtatgataaa ... ccttgaatagGGACACGACATTCTCATGGCTACAATGCTTAATGGAGCTGCTATCATGGAT
EST: gi|32930144|gb|CF034956.1|CF034956
EST:     AGAACACTAGAATGAAACTCCTGAGACATGTTTCTTTTGTTGATTGCCCG                         GGACACGACATTCTCATGGCTACAATGCTTAATGGAGCTGCTATCATGGAT
genomic: AAAACACTAGAATGAAACTCCTGAGACATGTTTCTTTTGTTGATTGCCCGgtatgataaa ... ccttgaatagGGACACGACATTCTCATGGCTACAATGCTTAATGGAGCTGCTATCATGGAT
EST: gi|22473323|gb|BU037803.1|BU037803
EST:     AAAACACTAGAATGAAACTCCTGAGACATGTTTCTTTTGTTGATTGCCCG                         GGACACGACATTCTCATGGCTA
genomic: AAAACACTAGAATGAAACTCCTGAGACATGTTTCTTTTGTTGATTGCCCGgtatgataaa ... ccttgaatagGGACACGACATTCTCATGGCTA
EST: gi|21390140|gb|BQ528189.1|BQ528189
EST:     AAAACACTAGAATGAAACTCCTGAGACATGTTTCTTTTGTTGATTGCCCG                         GGACACGACATTCTCATGGCTACAATGCTTAATGGAGCTGCTATCATGGAT
genomic: AAAACACTAGAATGAAACTCCTGAGACATGTTTCTTTTGTTGATTGCCCGgtatgataaa ... ccttgaatagGGACACGACATTCTCATGGCTACAATGCTTAATGGAGCTGCTATCATGGAT
EST: gi|21987148|gb|BQ778676.1|BQ778676
EST:     AAAACACTAGAATGAAACTCCTGAGACATGTTTCTTTTGTTGATTGCCCG                         GGACACGACATTCTCATGGCTACAATGCTTAATGGAGCTGCTATCATGGAT
genomic: AAAACACTAGAATGAAACTCCTGAGACATGTTTCTTTTGTTGATTGCCCGgtatgataaa ... ccttgaatagGGACACGACATTCTCATGGCTACAATGCTTAATGGAGCTGCTATCATGGAT
EST: gi|32909292|gb|CF014104.1|CF014104
EST:     AGAACACTAGAATGAAACTCCTGAGACATGTTTCTTTTGTTGATTGCCCG                         GGACACGACATTCTCATGGCTACAATGCTTAATGGAGCTGCTATCATGGAT
genomic: AAAACACTAGAATGAAACTCCTGAGACATGTTTCTTTTGTTGATTGCCCGgtatgataaa ... ccttgaatagGGACACGACATTCTCATGGCTACAATGCTTAATGGAGCTGCTATCATGGAT
EST: gi|22520926|gb|BU079737.1|BU079737
EST:     AAAACACTAGAATGAAACTCCTGAGACATGTTTCTTTTGTTGATTGCCCG                         GGACACGACATTCTCATGGCTACAATGCTTAATGGAGCTGCTATCATGGAT
genomic: AAAACACTAGAATGAAACTCCTGAGACATGTTTCTTTTGTTGATTGCCCGgtatgataaa ... ccttgaatagGGACACGACATTCTCATGGCTACAATGCTTAATGGAGCTGCTATCATGGAT
EST: gi|21331715|gb|BQ487096.1|BQ487096
EST:     AAAACACTAGAATGAAACTCCTGAGACATGTTTCTTTTGTTGATTGCCCG                         GGACACGACATTCTCATGGCTACAATGCTTAATGGAGCTGCTATCATGGAT
genomic: AAAACACTAGAATGAAACTCCTGAGACATGTTTCTTTTGTTGATTGCCCGgtatgataaa ... ccttgaatagGGACACGACATTCTCATGGCTACAATGCTTAATGGAGCTGCTATCATGGAT
EST: gi|60397288|gb|DN230104.1|DN230104
EST:     AAAACACTAGAATGAAACTCCTGAGACATGTTTCTTTTGTTGATTGCCCG                         GGACACGACATTCTCATGGCTACAATGCTTAATGGAGCTGCTATCATGGAT
genomic: AAAACACTAGAATGAAACTCCTGAGACATGTTTCTTTTGTTGATTGCCCGgtatgataaa ... ccttgaatagGGACACGACATTCTCATGGCTACAATGCTTAATGGAGCTGCTATCATGGAT
EST: gi|87151873|gb|DY396662.1|DY396662
EST:     AGAACACTAGAATGAAACTCCTGAGACATGTTTCTTTTGTTGATTGCCCG                         GGACACGACATTCTCATGGCTACAATGCTTAATGGAGCTGCTATCATGGAT
genomic: AAAACACTAGAATGAAACTCCTGAGACATGTTTCTTTTGTTGATTGCCCGgtatgataaa ... ccttgaatagGGACACGACATTCTCATGGCTACAATGCTTAATGGAGCTGCTATCATGGAT
EST: gi|19351461|gb|BM895993.1|BM895993
EST:     AGAACACTAGAATGAAACTCCTGAGACATGTTTCTTTTGTTGATTGCCCG                         GGACACGACATTCTCATGGCTACAATGCTTAATGGAGCTGCTATCATGGAT
genomic: AAAACACTAGAATGAAACTCCTGAGACATGTTTCTTTTGTTGATTGCCCGgtatgataaa ... ccttgaatagGGACACGACATTCTCATGGCTACAATGCTTAATGGAGCTGCTATCATGGAT
EST: gi|14646048|gb|BI180237.1|BI180237
EST:     AAAACACTAGAATGAAACTCCTGAGACATGTTTCTTTTGTTGATTGCCCG                         GGACACGACATTCTCATGGCTACAATGCTTAATGGAGCTGCTATCATGGAT
genomic: AAAACACTAGAATGAAACTCCTGAGACATGTTTCTTTTGTTGATTGCCCGgtatgataaa ... ccttgaatagGGACACGACATTCTCATGGCTACAATGCTTAATGGAGCTGCTATCATGGAT
EST: gi|21891495|gb|BQ744708.1|BQ744708
EST:     AAAACACTAGAATGAAACTCCTGAGACATGTTTCTTTTGTTGATTGCCCG                         GGACACGACATTCTCATGGCTACAATGCTTAATGGAGCTGCTATCATGGAT
genomic: AAAACACTAGAATGAAACTCCTGAGACATGTTTCTTTTGTTGATTGCCCGgtatgataaa ... ccttgaatagGGACACGACATTCTCATGGCTACAATGCTTAATGGAGCTGCTATCATGGAT
EST: gi|211223722|gb|FL287027.1|FL287027
EST:     AAAACACTAGAATGAAACTCCTGAGACATGTTTCTTTTGTTGATTGCCCG                         GGACACGACATTCTCATGGCTACAATGCTTAATGGAGCTGCTATCATGGAT
genomic: AAAACACTAGAATGAAACTCCTGAGACATGTTTCTTTTGTTGATTGCCCGgtatgataaa ... ccttgaatagGGACACGACATTCTCATGGCTACAATGCTTAATGGAGCTGCTATCATGGAT
EST: gi|22542245|gb|BU092683.1|BU092683
EST:     AAAACACTAGAATGAAACTCCTGAGACATGTTTCTTTTGTTGATTGCCCG                         GGACACGACATTCTCATGGCTACAATGCTTAATGGAGCTGCTATCATGGAT
genomic: AAAACACTAGAATGAAACTCCTGAGACATGTTTCTTTTGTTGATTGCCCGgtatgataaa ... ccttgaatagGGACACGACATTCTCATGGCTACAATGCTTAATGGAGCTGCTATCATGGAT

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 841

CTATGGAAGCGGAAAAGAAGATAGCCCTCTATGTGATGTGCCTGGATTTGAAAACACTAGAATGAAACTCCTGAGACATGTTTCTTTTGTTGATTGCCCGgtatgataaa ... ccttgaatagGGACACGACATTCTCATGGCTACAATGCTTAATGGAGCTGCTATCATGGATGGAGCTCTTCTTTTGATCGCAGCAAATGAAAGTTGTCCACAGCCCCAGA


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 551

CTATGGAAGCGGAAAAGAAGATAGCCCTCTATGTGATGTGCCTGGATTTGAAAACACTAGAATGAAACTCCTGAGACATGTTTCTTTTGTTGATTGCCCGgtatgataaa ... ccttgaatagGGACACGACATTCTCATGGCTACAATGCTTAATGGAGCTGCTATCATGGATGGAGCTCTTCTTTTGATCGCAGCAAATGAAAGTTGTCCACAGCCCCAGA


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 363

CTATGGAAGCGGAAAAGAAGATAGCCCTCTATGTGATGTGCCTGGATTTGAAAACACTAGAATGAAACTCCTGAGACATGTTTCTTTTGTTGATTGCCCGgtatgataaa ... ccttgaatagGGACACGACATTCTCATGGCTACAATGCTTAATGGAGCTGCTATCATGGATGGAGCTCTTCTTTTGATCGCAGCAAATGAAAGTTGTCCACAGCCCCAGA


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 381

CTATGGAAGCGGAAAAGAAGATAGCCCTCTATGTGATGTGCCTGGATTTGAAAACACTAGAATGAAACTCCTGAGACATGTTTCTTTTGTTGATTGCCCGgtatgataaa ... ccttgaatagGGACACGACATTCTCATGGCTACAATGCTTAATGGAGCTGCTATCATGGATGGAGCTCTTCTTTTGATCGCAGCAAATGAAAGTTGTCCACAGCCCCAGA


Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CTATGGAAGCGGAAAAGAAGATAGCCCTCTATGTGATGTGCCTGGATTTGAAAACACTAGAATGAAACTCCTGAGACATGTTTCTTTTGTTGATTGCCCGgtatgataaagtatttaccacttttcttgtagcattattctgttgcattagtgtttaaatatcccgggcctaattatattgtacctaccacctaaatcct

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cctaccac