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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTAAGCAGAGAGAATAAGCTTACCAAATCATCAGTCATGGTCACTGCTGGTGCAAATCAGgtaagttctgcctgcatttactacctattttgccttgtagtgttttccaaatgggccttatgtttcccaatttacttctgttaattacttctttgggggcacactcttctttcctgtttcactgctagaccttgatcttgtcttataatctggtcttttctaacattgattttttcag

Basic information

species Zea mays
transcript GRMZM2G107639_T02
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G107639_T01 (Zea mays), 5'ss of exon 4
lower sequence: LOC_Os01g08270.1 (Oryza sativa), 5'ss of exon 5
CTAAGCAGAGAGAATAAGCTTACCAAATCATCAGTCATGGTCACTGCTGGTGCAAATCAGgtaagttctgcctgcatttactacctattttgccttgtagtgttttccaaatgggccttatgtttcccaatttacttctgttaattacttctt-tgggggcacactcttctttcctgtttcactgctagaccttgatcttgtcttataatctggtcttttctaacattgattttttcag
||  |||||||||||||||| ||||| || ||| | ||||| ||  ||||||||||||||||||        ||||  | ||  | | ||| ||   |  | | || ||  |  | | | | | | ||  ||| | |||||  |||    ||| |   |  | ||| |                                                                       
CTGCGCAGAGAGAATAAGCTAACCAAGTCGTCAATTATGGTTACCTCTGGTGCAAATCAGgtaa--------tgcacatgctttccagttt-ccacctgatttattacagctttgtcatct-tattccggttttcctctgtgtattttgccttgtttagctagactatag---------------------------------------------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211528508|gb|FL328866.1|FL328866
EST:     AGAACAAGCTTACCAAATCATCTGTCATGGTCACTGCTGGTGCAAATNAG                         GCTTTTGTGAACTTGGTCCTCACTCTTTGTGATGCTGGTGATTCCGTTGTC
genomic: AGAATAAGCTTACCAAATCATCAGTCATGGTCACTGCTGGTGCAAATCAGgtaagttctg ... attttttcagGCTTTTGTGAACTTGGTCCTCACTCTCTGTGATGCTGGTGATTCCGTTGTC
EST: gi|148932368|gb|EC876010.2|EC876010
EST:     AGAATAAGCTTACCAAATCATCAGTCATGGTCACTGCTGGTGCAAATCAG                         GCTTTTGTGAACTTGGTCCTCACTCTCTGTGATGCTGGTGATTCCGTTGTC
genomic: AGAATAAGCTTACCAAATCATCAGTCATGGTCACTGCTGGTGCAAATCAGgtaagttctg ... attttttcagGCTTTTGTGAACTTGGTCCTCACTCTCTGTGATGCTGGTGATTCCGTTGTC
EST: gi|211307789|gb|FL085770.1|FL085770
EST:     AGAACAAGCTTACCAAATCATCTGTCATGGTCACTGCTGGTGCAAATCAG                         GCTTTTGTGAACTTGGTCCTCACTCTTTGTGATGCTGGTGATTCCGTTGTC
genomic: AGAATAAGCTTACCAAATCATCAGTCATGGTCACTGCTGGTGCAAATCAGgtaagttctg ... attttttcagGCTTTTGTGAACTTGGTCCTCACTCTCTGTGATGCTGGTGATTCCGTTGTC
EST: gi|211325052|gb|FL357886.1|FL357886
EST:     AGAACAAGCTTACCAAATCATCAGTCATGGTCACTGCTGGTGCAAATCAG                         GCTTTTGTGAACTTGGTCCTCACTCTTTGTGATGCTGGTGATTCCGTTGTC
genomic: AGAATAAGCTTACCAAATCATCAGTCATGGTCACTGCTGGTGCAAATCAGgtaagttctg ... attttttcagGCTTTTGTGAACTTGGTCCTCACTCTCTGTGATGCTGGTGATTCCGTTGTC
EST: gi|211329406|gb|FL358391.1|FL358391
EST:     AGAACAAGCTTACCAAATCATCTGTCATGGTCACTGCTGGTGCAAATCAG                         GCTTTTGTGAACTTGGTCCTCACTCTTTGTGATGCTGGTGATTCCGT
genomic: AGAATAAGCTTACCAAATCATCAGTCATGGTCACTGCTGGTGCAAATCAGgtaagttctg ... attttttcagGCTTTTGTGAACTTGGTCCTCACTCTCTGTGATGCTGGTGATTCCGT
EST: gi|211526539|gb|FL366365.1|FL366365
EST:     AGAACAAGCTTACCAAATCATCAGTCATGGTCACTGCTGGTGCAAATCAG                         GCTTTTGTGAACTTGGTCCTCACTCTTTGTGATGCTGGTGATTCCGTTGTC
genomic: AGAATAAGCTTACCAAATCATCAGTCATGGTCACTGCTGGTGCAAATCAGgtaagttctg ... attttttcagGCTTTTGTGAACTTGGTCCTCACTCTCTGTGATGCTGGTGATTCCGTTGTC
EST: gi|67030337|gb|CO459086.1|CO459086
EST:     AGAACAAGCTTACCAAATCATCTGTCATGGTCACTGCTGGTGCAAATCAG                         GCTTTTGTGAACTTGGTCCTCACTCTTTGTGATGCTGGTGATTCCGTTATC
genomic: AGAATAAGCTTACCAAATCATCAGTCATGGTCACTGCTGGTGCAAATCAGgtaagttctg ... attttttcagGCTTTTGTGAACTTGGTCCTCACTCTCTGTGATGCTGGTGATTCCGTTGTC
EST: gi|211237919|gb|FL362192.1|FL362192
EST:     AGAACAAGCTTACCAAATCATCTGTCATGGTCACTGCTGGTGCAAATCAG                         GCTTTTGTGAACTTGGTCCTCACTCTTTGTGATG
genomic: AGAATAAGCTTACCAAATCATCAGTCATGGTCACTGCTGGTGCAAATCAGgtaagttctg ... attttttcagGCTTTTGTGAACTTGGTCCTCACTCTCTGTGATG
EST: gi|148990980|gb|EE032414.2|EE032414
EST:     AGAATAAGCTTACCAAATCATCAGTCATGGTCACTGCTGGTGCAAATCAG                         GCTTTTGTGAACTTGGTCCTCACTCTCTGTGATGCTGGTGATTCCGTTGTC
genomic: AGAATAAGCTTACCAAATCATCAGTCATGGTCACTGCTGGTGCAAATCAGgtaagttctg ... attttttcagGCTTTTGTGAACTTGGTCCTCACTCTCTGTGATGCTGGTGATTCCGTTGTC
EST: gi|149037081|gb|EE155270.2|EE155270
EST:     AGAATAAGCTTACCAAATCATCAGTCATGGTCACTGCTGGTGCAAATCAG                         GCTTTTGTGAACTTGGTCCTCACTCTCTGTGATGCTGGTGATTCCGTTGTC
genomic: AGAATAAGCTTACCAAATCATCAGTCATGGTCACTGCTGGTGCAAATCAGgtaagttctg ... attttttcagGCTTTTGTGAACTTGGTCCTCACTCTCTGTGATGCTGGTGATTCCGTTGTC
EST: gi|211023084|gb|FL313921.1|FL313921
EST:     AGAACAAGCTTACCAAATCATCAGTCATGGTCACTGCTGGTGCAAATCAG                         GCTTTTGTGAACTTGGTCCTCACTCTTTGTGATGCTGGTGAT
genomic: AGAATAAGCTTACCAAATCATCAGTCATGGTCACTGCTGGTGCAAATCAGgtaagttctg ... attttttcagGCTTTTGTGAACTTGGTCCTCACTCTCTGTGATGCTGGTGAT
EST: gi|211213774|gb|FL353738.1|FL353738
EST:     AGAACAAGCTTACCWAATCATCAGTCATGGTCACTGCTGGTGCAAATCAG                         GCTTTWGTGAACTTGGTCCTCACTCTTTGTGATGCTGGTGAT
genomic: AGAATAAGCTTACCAAATCATCAGTCATGGTCACTGCTGGTGCAAATCAGgtaagttctg ... attttttcagGCTTTTGTGAACTTGGTCCTCACTCTCTGTGATGCTGGTGAT
EST: gi|148931036|gb|EC873618.2|EC873618
EST:     AGAATAAGCTTACCAAATCATCAGTCATGGTCACTGCTGGTGCAAATCAG                         GCTTTTGTGAACTTGGTCCTCACTCTCTGTGATGCTGGTGATTCCGTTGTC
genomic: AGAATAAGCTTACCAAATCATCAGTCATGGTCACTGCTGGTGCAAATCAGgtaagttctg ... attttttcagGCTTTTGTGAACTTGGTCCTCACTCTCTGTGATGCTGGTGATTCCGTTGTC
EST: gi|211305634|gb|FL309433.1|FL309433
EST:     AGAACAAGCTTACCAAATCATCTGTCATGGTCACTGCTGGTGCAAATCAG                         GCTTTTGTGAACTTGGTCCTCACTCTTTGTGATGCTGGTGATT
genomic: AGAATAAGCTTACCAAATCATCAGTCATGGTCACTGCTGGTGCAAATCAGgtaagttctg ... attttttcagGCTTTTGTGAACTTGGTCCTCACTCTCTGTGATGCTGGTGATT
EST: gi|211448663|gb|FL323020.1|FL323020
EST:     AGAACAAGCTTACCAAATCATCTGTCATGGTCACTGCTGGTGCAAATCAG                         GCTTTTGTGAACTTGGTCCTCACTCTTTGTGATG
genomic: AGAATAAGCTTACCAAATCATCAGTCATGGTCACTGCTGGTGCAAATCAGgtaagttctg ... attttttcagGCTTTTGTGAACTTGGTCCTCACTCTCTGTGATG
EST: gi|211136252|gb|FL346220.1|FL346220
EST:     AGAACAAGCTTACCAAATCATCTGTCATGGTCACTRCTGGTGCAA-TCAG                         GCTTTTGTGAACTTGGTCCTCACTCTTTGTGATGCTGGTG
genomic: AGAATAAGCTTACCAAATCATCAGTCATGGTCACTGCTGGTGCAAATCAGgtaagttctg ... attttttcagGCTTTTGTGAACTTGGTCCTCACTCTCTGTGATGCTGGTG
EST: gi|76286951|gb|DV026519.1|DV026519
EST:     AGAATAAGCTTACCAAATCATCAGTCATGGTCACTGCTGGTGCAAATCAG                         GCTTTTGTGAACTTGGTCCTCACTCTCTGTGATGCTGGTGATTCCGTTGTC
genomic: AGAATAAGCTTACCAAATCATCAGTCATGGTCACTGCTGGTGCAAATCAGgtaagttctg ... attttttcagGCTTTTGTGAACTTGGTCCTCACTCTCTGTGATGCTGGTGATTCCGTTGTC
EST: gi|211126683|gb|FL312966.1|FL312966
EST:     AGAACAAGCTTACCAAATCATCAGTCATGGTCACTGCTGGTGCAAATCAG                         GCTTTTGTGAACTTGGTCCTCACTCTTTGTGATGCTGGTGATTCCGTTGTC
genomic: AGAATAAGCTTACCAAATCATCAGTCATGGTCACTGCTGGTGCAAATCAGgtaagttctg ... attttttcagGCTTTTGTGAACTTGGTCCTCACTCTCTGTGATGCTGGTGATTCCGTTGTC
EST: gi|211010784|gb|FL361163.1|FL361163
EST:     AGAACAAGCTTACCAAATCATCTGTCATGGTCACTGCTGGTGCAAATCAG                         GCTTTTGTGAACTTGGTCCTCACTCTTTGTGATGCTGGTGATTCCGTTGTC
genomic: AGAATAAGCTTACCAAATCATCAGTCATGGTCACTGCTGGTGCAAATCAGgtaagttctg ... attttttcagGCTTTTGTGAACTTGGTCCTCACTCTCTGTGATGCTGGTGATTCCGTTGTC
EST: gi|211111425|gb|FL330322.1|FL330322
EST:     AGAACAAGCTTACCAAATCATCTGTCATGGTCACTKCTGGTGCAAATCAG                         GCTTTTGTGAACTTGGT
genomic: AGAATAAGCTTACCAAATCATCAGTCATGGTCACTGCTGGTGCAAATCAGgtaagttctg ... attttttcagGCTTTTGTGAACTTGGT
EST: gi|148963140|gb|EE014107.2|EE014107
EST:     AGAATAAGCTTACCAAATCATCAGTCATGGTCACTGCTGGTGCAAATCAG                         GCTTTTGTGAACTTGGTCCTCACTCTCTGTGATGCTGGTGATTCCGTTGTC
genomic: AGAATAAGCTTACCAAATCATCAGTCATGGTCACTGCTGGTGCAAATCAGgtaagttctg ... attttttcagGCTTTTGTGAACTTGGTCCTCACTCTCTGTGATGCTGGTGATTCCGTTGTC
EST: gi|67011573|gb|CO440322.1|CO440322
EST:     TGGTCACTGCTGGTGCAAATCAC                         GCTTTTGTGAACTTGGTCCTCACTCTTTGTGATGCTGGTGATTCCGTTATC
genomic: TGGTCACTGCTGGTGCAAATCAGgtaagttctg ... attttttcagGCTTTTGTGAACTTGGTCCTCACTCTCTGTGATGCTGGTGATTCCGTTGTC
EST: gi|211260539|gb|FL346343.1|FL346343
EST:     AGAACAAGCTTACCAAATCATCTGTCATGGTCACTGCTGGTGCAAATCAG                         GCTTTTGTGAACTTGGTCCTCACTCTTTGTGATGCTGGTGATTCCGTTGTC
genomic: AGAATAAGCTTACCAAATCATCAGTCATGGTCACTGCTGGTGCAAATCAGgtaagttctg ... attttttcagGCTTTTGTGAACTTGGTCCTCACTCTCTGTGATGCTGGTGATTCCGTTGTC
EST: gi|148950038|gb|EC895570.2|EC895570
EST:     AGAATAAGCTTACCAAATCATCAGTCATGGTCACTGCTGGTGCAAATCAG                         GCTTTTGTGAACTTGGTCCTCACTCTCTGTGATGCTGGTGATTCCGTTGTC
genomic: AGAATAAGCTTACCAAATCATCAGTCATGGTCACTGCTGGTGCAAATCAGgtaagttctg ... attttttcagGCTTTTGTGAACTTGGTCCTCACTCTCTGTGATGCTGGTGATTCCGTTGTC
EST: gi|149112179|gb|EE295100.2|EE295100
EST:     AGAATAAGCTTACCAAATCATCAGTCATGGTCACTGCTGGTGCAAATCAG                         GCTTTTGTGAACTTGGTCCTCACTCTCTGTGATGCTGGTGATTCCGTTGTC
genomic: AGAATAAGCTTACCAAATCATCAGTCATGGTCACTGCTGGTGCAAATCAGgtaagttctg ... attttttcagGCTTTTGTGAACTTGGTCCTCACTCTCTGTGATGCTGGTGATTCCGTTGTC
EST: gi|149084340|gb|EE173781.2|EE173781
EST:     AGAATAAGCTTACCAAATCATCAGTCATGGTCACTGCTGGTGCAAATCAG                         GCTTTTGTGAACTTGGTCCTCACTCTCTGTGATGCTGGTGATTCCGTTGTC
genomic: AGAATAAGCTTACCAAATCATCAGTCATGGTCACTGCTGGTGCAAATCAGgtaagttctg ... attttttcagGCTTTTGTGAACTTGGTCCTCACTCTCTGTGATGCTGGTGATTCCGTTGTC
EST: gi|148947797|gb|EC893285.2|EC893285
EST:     AGAATAAGCTTACCAAATCATCAGTCATGGTCACTGCTGGTGCAAATCAG                         GCTTTTGTGAACTTGGTCCTCACTCTCTGTGATGCTGGTGATTCCGTTGTC
genomic: AGAATAAGCTTACCAAATCATCAGTCATGGTCACTGCTGGTGCAAATCAGgtaagttctg ... attttttcagGCTTTTGTGAACTTGGTCCTCACTCTCTGTGATGCTGGTGATTCCGTTGTC
EST: gi|211391856|gb|FL357117.1|FL357117
EST:     AGAACAAGCTTACCAAATCATCTGTCATGGTCACTGCTGGTGCAAATCAG                         GCTTTTGTGAACTTGGTCCTCACTCTTTGTGATGCTGGTGATTCCGTTGTC
genomic: AGAATAAGCTTACCAAATCATCAGTCATGGTCACTGCTGGTGCAAATCAGgtaagttctg ... attttttcagGCTTTTGTGAACTTGGTCCTCACTCTCTGTGATGCTGGTGATTCCGTTGTC
EST: gi|211026505|gb|FL356245.1|FL356245
EST:     AGAACAAGCTTACCAAATCATCTGTCATGGTCACTGCTGGTGCAAATCAG                         GCTTTTGTGAACTTGGTCC
genomic: AGAATAAGCTTACCAAATCATCAGTCATGGTCACTGCTGGTGCAAATCAGgtaagttctg ... attttttcagGCTTTTGTGAACTTGGTCC
EST: gi|50325408|gb|CO520534.1|CO520534
EST:     AGAATAAGCTTACCAAATCATCAGTCATGGTCACTGCTGGTGCAAATCAG                         GCTTTTGTGAACTTGGTCCTCACTCTCTGTGATGCTGGTGATTCCGTTGTC
genomic: AGAATAAGCTTACCAAATCATCAGTCATGGTCACTGCTGGTGCAAATCAGgtaagttctg ... attttttcagGCTTTTGTGAACTTGGTCCTCACTCTCTGTGATGCTGGTGATTCCGTTGTC
EST: gi|211050425|gb|FL364299.1|FL364299
EST:     AGAACAAGCTTACCAAATCATCAGTCATGGTCACTGCTGGTGCAAATCAG                         GCTTTTGTGAACTTGGTCCTCACTCTTTGTGATGCTGGTGATTCCGTTGTC
genomic: AGAATAAGCTTACCAAATCATCAGTCATGGTCACTGCTGGTGCAAATCAGgtaagttctg ... attttttcagGCTTTTGTGAACTTGGTCCTCACTCTCTGTGATGCTGGTGATTCCGTTGTC