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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACACTGACTGCACCTTCATCAGGGTGTCTGGTTCTGAGTTGGTTCAGAAGTATATTGGTGAGGGCTCCCGGATGGTTAGGGAACTCTTTGTTATGGCCAGgtaggctgagtaaatatctccacatttcttttccttttgtagaactctttgttatggccaggtagctgagtaaatatctccacatttcttttcctgttgt...

Basic information

species Zea mays
transcript GRMZM2G107362_T04
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G107362_T04 (Zea mays), 5'ss of exon 5
lower sequence: LOC_Os02g11050.1 (Oryza sativa), 5'ss of exon 5
ACACTGACTGCACCTTCATCAGGGTGTCTGGTTCTGAGTTGGTTCAGAAGTATATTGGTGAGGGCTCCCGGATGGTTAGGGAACTCTTTGTTATGGCCAGgtaggctgagtaaatatctccacatttcttttccttttgtagaactctttgttatggccaggtagctgagtaaatatctccacatttcttttcctgttgt------------------------------------
|||||||||||||||||||||||||||||||||| ||||| ||||||||||| ||||||||||| || ||||||||  | |||||||||||||||||||||||  ||||| ||| ||  ||  | ||||| |  | | ||  ||  | || ||  |||  |  | ||||   | ||  || |||| |    || ||||||                                    
ACACTGACTGCACCTTCATCAGGGTGTCTGGTTCCGAGTTAGTTCAGAAGTACATTGGTGAGGGTTCTCGGATGGTCCGTGAACTCTTTGTTATGGCCAGgtaaactgagcaaaaataccctgagttcttctattatagtgaaag-cattatt--ggcttgcaatctgaacta-tagttctacatatgcactc-tgttgtcagtgtaggcttaattgtttggttaacatattacag

upper sequence: GRMZM2G107362_T04 (Zea mays), 5'ss of exon 5
lower sequence: GLYMA08G24000.1 (Glycine max), 5'ss of exon 5
ACACTGACTGCACCTTCATCAGGGTGTCTGGTTCTGAGTTGGTTCAGAAGTATATTGGTGAGGGCTCCCGGATGGTTAGGGAACTCTTTGTTATGGCCAGgtaggctgagtaaatatctccacatttcttttccttttgtagaa-ctctttgttatggccaggtagctgagtaaatatctccacatttcttttcctgttgt
| |||||||| || ||||||||||||||||||||||| || |||||||| || ||||| || || ||  | ||||| |||||||| ||||||||||||||||    |   |  |     |  | | | |      | ||| ||  || ||||   |   |    | | ||    |||    ||   |  | ||    |  |
ATACTGACTGTACATTCATCAGGGTGTCTGGTTCTGAATTAGTTCAGAAATACATTGGAGAAGGTTCTAGAATGGTCAGGGAACTTTTTGTTATGGCCAGgtttattctcttcactcagcttcctctatccattatctgttgattctgtttgccctaaaccaa-aacagaagggataaaaacattgtcttcttggcttcat

upper sequence: GRMZM2G107362_T04 (Zea mays), 5'ss of exon 5
lower sequence: GLYMA07G00420.1 (Glycine max), 5'ss of exon 5
ACACTGACTGCACCTTCATCAGGGTGTCTGGTTCTGAGTTGGTTCAGAAGTATATTGGTGAGGGCTCCCGGATGGTTAGGGAACTCTTTGTTATGGCCAGgtaggctgagtaaatatctccacatttcttttccttttgtagaactctttgttatggccaggtagctgagtaaatatctccacatttcttttcctgttgt
| |||||||| || |||||||||||||||||||||||||| |||||||| || ||||| || || ||  | ||||| |||||||| ||||||||||||||||    |   |  |  |  |  | | | ||     | ||| ||     ||    |  |     | | ||    |||    ||   |  | ||    |  |
ATACTGACTGTACATTCATCAGGGTGTCTGGTTCTGAGTTAGTTCAGAAATACATTGGAGAAGGTTCTAGAATGGTCAGGGAACTTTTTGTTATGGCCAGgtttattctctttacttggcttcctctattcattatctgttgattctgtttgccttacaccaaaacagaagggataaaaacaatgtcttcttggcttcat

upper sequence: GRMZM2G107362_T04 (Zea mays), 5'ss of exon 5
lower sequence: AT5G20000.1 (Arabidopsis thaliana), 5'ss of exon 5
ACACTGACTGCACCTTCATCAGGGTGTCTGGTTCTGAGTTGGTTCAGAAGTATATTGGTGAGGGCTCCCGGATGGTTAGGGAACTCTTTGTTATGGCCAGgtaggctga-gtaaatatctccacatttcttttccttttgtagaactctttgttatggccaggtagctgagtaaatatctccacatttcttttcctgttgt
|||||||||| || |||||||| || |||||||||||| |||| ||||| || ||||| || || ||  | ||||| || ||||| ||||| ||||| ||||  |   | |  | |   |    | |  ||      | ||| || |  | | |  |   || | |     |  | | |   | || | ||        ||
ACACTGACTGTACTTTCATCAGAGTTTCTGGTTCTGAGCTGGTCCAGAAATACATTGGAGAAGGTTCTAGAATGGTCAGAGAACTTTTTGTGATGGCAAGgtttgtacatgctagtccttatttaatatttcaagcatggtaaaagtggtaggttggaaaagatggaacttttgaca-cgataaatcttttacatgcccgt

upper sequence: GRMZM2G107362_T04 (Zea mays), 5'ss of exon 5
lower sequence: Vv04s0008g04690.t01 (Vitis vinifera), 5'ss of exon 5
ACACTGACTGCACCTTCATCAGGGTGTCTGGTTCTGAGTTGGTTCAGAAGTATATTGGTGAGGGCTCCCGGATGGTTAGGGAACTCTTTGTTATGGCCAGgtaggctgagta------------------------aatatctccaca---tttcttttccttttgtagaac--tctttgttatggccaggtagctgagtaaatatct----ccacatttcttttcctg-ttgt------------------------------------------------------------------
|||||||||| ||||| || ||||| ||||| |||||||| |||||||||||||||||||| || || || |||||||| ||||| ||||||||||| ||||  | | | ||                         |||   | | |   ||| |||| |  |  ||  |   | |||  ||||         ||| |||| | | |     ||||||| ||| |  | || |                                                                  
ACACTGACTGTACCTTTATAAGGGTTTCTGGCTCTGAGTTAGTTCAGAAGTATATTGGTGAAGGGTCTCGAATGGTTAGAGAACTGTTTGTTATGGCAAGgtttgtttaatatctttagtggaaaccatgacttgtgatacacctagaggatttatttttcactcataagataatattttatatgttacctctcctgggtaattgtttagagtcacatttttttcctgggttattgaattttgttttaaatctcccttttatcttgtccttatggtctcttctctgctgctttattacag

upper sequence: GRMZM2G107362_T04 (Zea mays), 5'ss of exon 5
lower sequence: Vv09s0002g05800.t01 (Vitis vinifera), 5'ss of exon 5
ACACTGACTGCACCTTCATCAGGGTGTCTGGTTCTGAGTTGGTTCAGAAGTATATTGGTGAGGGCTCCCGGATGGTTAGGGAACTCTTTGTTATGGCCAGgtaggctgagtaaatatctccacatttcttttcct-tttgtagaactctttgttatggccaggt-agctgagtaaatatctccacatttcttttcctgttgt--
| |||||||| || ||||||||||| ||||||||||| |||||||||||||| |||||||| |||||| | |||||||| ||||| || || ||||| ||||    ||  |||     |  | ||    |   |  |||||       |  |  | | | |    || |   |||||   ||  | ||   |||  || |||  
ATACTGACTGTACTTTCATCAGGGTTTCTGGTTCTGAATTGGTTCAGAAGTACATTGGTGAAGGCTCCAGAATGGTTAGAGAACTTTTCGTGATGGCAAGgt---ttgtataatctctttgaaatgcgatgcacagtttgtgtttgaatgcgccaagtctaaaccaggtttataaatgcttct-ctttaggtttgatgctgtga

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|32837096|gb|CD976774.1|CD976774
EST:     TATATTGGTGAGGGCTCCCGGATGGTTAGGGAACTCTTTGTTATGGCCAG                         GGAACATGCACCGTCCATTATATTTATGGATGAAATTGACTCTATCGGATC
genomic: TATATTGGTGAGGGCTCCCGGATGGTTAGGGAACTCTTTGTTATGGCCAGgtaggctgag ... cttattgcagGGAACATGCACCATCCATTATATTTATGGATGAAATTGACTCTATCGGATC
EST: gi|32837479|gb|CD977157.1|CD977157
EST:     TATATTGGTGAGGGCTCCCGGATGGTTAGGGAACTCTTTGTTATGGCCAG                         GGAACATGCACCGTCCATTATATTTATGGATGAAATTGACTCTATCGGATC
genomic: TATATTGGTGAGGGCTCCCGGATGGTTAGGGAACTCTTTGTTATGGCCAGgtaggctgag ... cttattgcagGGAACATGCACCATCCATTATATTTATGGATGAAATTGACTCTATCGGATC
EST: gi|32846543|gb|CD986224.1|CD986224
EST:     TATATTGGTGAGGGCTCCCGGATGGTTAGGGAACTCTTTGTTATGGCCAG                         GGAACATGCACCGTCCATTATATTTATGGATGAAATTGACTCTATCGGATC
genomic: TATATTGGTGAGGGCTCCCGGATGGTTAGGGAACTCTTTGTTATGGCCAGgtaggctgag ... cttattgcagGGAACATGCACCATCCATTATATTTATGGATGAAATTGACTCTATCGGATC
EST: gi|20301129|gb|BQ164072.1|BQ164072
EST:     TATATTGGTGAGGGCTCCCGGATGGTTAGGGAACTCTTTGTTATGGCCAG                         GGAACATGCACCATCCATTATATTTATGGATGAAATTGACTCTATCGGATC
genomic: TATATTGGTGAGGGCTCCCGGATGGTTAGGGAACTCTTTGTTATGGCCAGgtaggctgag ... cttattgcagGGAACATGCACCATCCATTATATTTATGGATGAAATTGACTCTATCGGATC
EST: gi|32928502|gb|CF033314.1|CF033314
EST:     TATATTGGTGAAGGTTCCCGGATGGTTCGGGAACTCTTTGTTATGGCCAG                         GGAACATGCGCCATCCATTATATTTATGGATGAAATTGACTCTATCGGATC
genomic: TATATTGGTGAGGGCTCCCGGATGGTTAGGGAACTCTTTGTTATGGCCAGgtaggctgag ... cttattgcagGGAACATGCACCATCCATTATATTTATGGATGAAATTGACTCTATCGGATC
EST: gi|32848420|gb|CD988101.1|CD988101
EST:     TATATTGGTGAGGGCTCCCGGATGGTTAGGGAACTCTTTGTTATGGCCAG                         GGAACATGCACCGTCCATTATATTTATGGATGAAATTGACTCTATCGGATC
genomic: TATATTGGTGAGGGCTCCCGGATGGTTAGGGAACTCTTTGTTATGGCCAGgtaggctgag ... cttattgcagGGAACATGCACCATCCATTATATTTATGGATGAAATTGACTCTATCGGATC
EST: gi|5847445|gb|AW000524.1|AW000524
EST:     TATATTGGTGAGGGCTCCCGGATGGTTAGGGAACTCTTTGTTATGGCCAG                         GGAACATGCACCATCCATTATATTTATGGATGAAATTGACTCTATCGGATC
genomic: TATATTGGTGAGGGCTCCCGGATGGTTAGGGAACTCTTTGTTATGGCCAGgtaggctgag ... cttattgcagGGAACATGCACCATCCATTATATTTATGGATGAAATTGACTCTATCGGATC
EST: gi|32836397|gb|CD976075.1|CD976075
EST:     TATATTGGTGAGGGCTCCCGGATGGTTAGGGAACTCTTTGTTATGGCCAG                         GGAACATGCACCGTCCATTATATTTATGGATGAAATTGACTCTATCGGATC
genomic: TATATTGGTGAGGGCTCCCGGATGGTTAGGGAACTCTTTGTTATGGCCAGgtaggctgag ... cttattgcagGGAACATGCACCATCCATTATATTTATGGATGAAATTGACTCTATCGGATC