1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
GCAATAATCAATGATCCTTTCATGCTTAACAGTGTCATATTGGTATTTGCCAATAAACAAGATATGgtgaggcaacaatacttgacccttcatatatatattagctcggccgggagggggggagaccgcctcccggtattatattaagaaaagatcgaaacatggt...
species | Zea mays |
transcript | GRMZM2G106795_T01 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: CAGTGTCATATTGGTATTTGCCAATAAACAAGATATG AAAGGGGCAATGACACCAATGGAGGTGTGTGAGGGCCTTGGCCTCTACGATEST: gi|16925416|gb|BM078484.1|BM078484
genomic: CAGTGTCATATTGGTATTTGCCAATAAACAAGATATGgtgaggcaac ... ttttttttagAAAGGGGCAATGACACCAATGGAGGTGTGTGAGGGCCTTGGCCTCTACGAT
EST: CTTTCATGCTTAACAGTGTCATATTGGTATTTGCCAATAAACAAGATATG AAAGGGGCAATGACACCAATGGAGGTGTGTGAGGGCCTTGGCCTCTACGATEST: gi|5714168|gb|AI944153.1|AI944153
genomic: CTTTCATGCTTAACAGTGTCATATTGGTATTTGCCAATAAACAAGATATGgtgaggcaac ... ttttttttagAAAGGGGCAATGACACCAATGGAGGTGTGTGAGGGCCTTGGCCTCTACGAT
EST: CTTTCATGCTTAACAGTGTCATATTGGTATTTGCCAATAAACAAGATATG AAAGGGGCAATGACACCAATGGAGGTGTGTGAGGGCCTTGGCCTCTACGATEST: gi|211066469|gb|FL305329.1|FL305329
genomic: CTTTCATGCTTAACAGTGTCATATTGGTATTTGCCAATAAACAAGATATGgtgaggcaac ... ttttttttagAAAGGGGCAATGACACCAATGGAGGTGTGTGAGGGCCTTGGCCTCTACGAT
EST: CTTTCATGCTTAACAGTGTCATATTGGTATTTGCCAATAAACAAGATATG AAAGGGGCAATGACACCNAATGGAGGTGTGTNNGAGGGCCTTGGCCTCTACEST: gi|14243025|gb|BG840736.2|BG840736
genomic: CTTTCATGCTTAACAGTGTCATATTGGTATTTGCCAATAAACAAGATATGgtgaggcaac ... ttttttttagAAAGGGGCAATGACACC-AATGGAGGTGTGT--GAGGGCCTTGGCCTCTAC
EST: CTTTCATGCTTAACAGTGTCATATTGGTATTTGCCAATAAACAAGATATG AAAGGGGCAATGACACCAATGGAGGTGTGTGAGGGCCTTGGCCTCTACGATEST: gi|78088306|gb|DV516699.1|DV516699
genomic: CTTTCATGCTTAACAGTGTCATATTGGTATTTGCCAATAAACAAGATATGgtgaggcaac ... ttttttttagAAAGGGGCAATGACACCAATGGAGGTGTGTGAGGGCCTTGGCCTCTACGAT
EST: CTTTCATGCTTAACAGTGTCATATTGGTATTTGCCAATAAACAAGATATG AAAGGGGCAATGACACCAATGGAGGTGTGTGAGGGCCTTGGCCTCTACGATEST: gi|14242874|gb|BG840205.2|BG840205
genomic: CTTTCATGCTTAACAGTGTCATATTGGTATTTGCCAATAAACAAGATATGgtgaggcaac ... ttttttttagAAAGGGGCAATGACACCAATGGAGGTGTGTGAGGGCCTTGGCCTCTACGAT
EST: CTTTCATGCTTAACAGTGTCATATTGGTATTTGCCAATAAACAAGATATG AAAGGGGCAATGACACCAATGGAGGTGTGTGAGGGCCTTGGCCTCTACGATEST: gi|211531543|gb|FL329354.1|FL329354
genomic: CTTTCATGCTTAACAGTGTCATATTGGTATTTGCCAATAAACAAGATATGgtgaggcaac ... ttttttttagAAAGGGGCAATGACACCAATGGAGGTGTGTGAGGGCCTTGGCCTCTACGAT
EST: CTTTCATGCTTAACAGTGTCATATTGGTATTTGCCAATAAACAAGATATG AAAGGGGCAATGACACCAATGGAGGTGTGTGAGGGCCTTGGCCTCTACGATEST: gi|78021877|gb|DV490264.1|DV490264
genomic: CTTTCATGCTTAACAGTGTCATATTGGTATTTGCCAATAAACAAGATATGgtgaggcaac ... ttttttttagAAAGGGGCAATGACACCAATGGAGGTGTGTGAGGGCCTTGGCCTCTACGAT
EST: CTTTCATGCTTAACAGTGTCATATTGGTATTTGCCAATAAACAAGATATG AAAGGGGCAATGACACCAATGGAGGTGTGTGAGGGCCTTGGCCTCTACGAT
genomic: CTTTCATGCTTAACAGTGTCATATTGGTATTTGCCAATAAACAAGATATGgtgaggcaac ... ttttttttagAAAGGGGCAATGACACCAATGGAGGTGTGTGAGGGCCTTGGCCTCTACGAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCAATAATCAATGATCCTTTCATGCTTAACAGTGTCATATTGGTATTTGCCAATAAACAAGATATGgtgaggcaacaatacttgacccttcatatatatattagctcggccgggagggggggagaccgcctcccggtattatattaagaaaagatcgaaacatggt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cgcctcc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aagaaaag