1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
AAGCTTACTTATATGATGGTTACTGGGAAGATATTGGTACTATTGAAGCATTTTATAATGCAAACTTGGGAATAACCAAGAAGCCTGTACCGGATTTTAGgtatggtttgtacatgtctacataaagttaagatgttgcaattttctagatctaccacttacctttgatcaaacattctgtatacag
species | Zea mays |
transcript | GRMZM2G106213_T02 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: TTTTATAATGCAAACTTGGGAATAACCAAGAAGCCTGTACCGGATTTTAG CTTCTATGATCGTTCTGCTCCAATTTATACGCAACCTAGATATTTGCCTCCEST: gi|31357016|gb|CD441373.1|CD441373
genomic: TTTTATAATGCAAACTTGGGAATAACCAAGAAGCCTGTACCGGATTTTAGgtatggtttg ... ctgtatacagCTTCTATGATCGTTCTGCTCCAATTTATACGCAACCTAGATATTTGCCTCC
EST: TTTTATAATGCAAACTTGGGAATAACCAAGAAGCCTGTACCGGATTTTAG CTTCTATGATCGTTCTGCTCCAATTTATACGCAACCTAGATATTTGCCTCCEST: gi|32929383|gb|CF034195.1|CF034195
genomic: TTTTATAATGCAAACTTGGGAATAACCAAGAAGCCTGTACCGGATTTTAGgtatggtttg ... ctgtatacagCTTCTATGATCGTTCTGCTCCAATTTATACGCAACCTAGATATTTGCCTCC
EST: ACCGGATTTTAG CTTCTATGATCGGTCTGCACCAATTTATACGCAACCTAGATATTTGCCTCCEST: gi|463337|gb|T18304.1|T18304
genomic: ACCGGATTTTAGgtatggtttg ... ctgtatacagCTTCTATGATCGTTCTGCTCCAATTTATACGCAACCTAGATATTTGCCTCC
EST: TTTTATAATGCAAACTTGGGAATAACCAAGAAGCCTGTACCGGATTTTAG CTTCTATGATCGTNCTGCTCCAATTTATACGCAACCTAGATATTTGCCTCCEST: gi|67042108|gb|CO468363.1|CO468363
genomic: TTTTATAATGCAAACTTGGGAATAACCAAGAAGCCTGTACCGGATTTTAGgtatggtttg ... ctgtatacagCTTCTATGATCGTTCTGCTCCAATTTATACGCAACCTAGATATTTGCCTCC
EST: TTTTATAATGCAAACTTGGGAATAACCAAGAAGCCTGTACCGGATTTTAG CTTCTATGATCGTTCTGCTCCAATTTATACGCAACCTAGATATTTGCCTCCEST: gi|211441725|gb|FL406263.1|FL406263
genomic: TTTTATAATGCAAACTTGGGAATAACCAAGAAGCCTGTACCGGATTTTAGgtatggtttg ... ctgtatacagCTTCTATGATCGTTCTGCTCCAATTTATACGCAACCTAGATATTTGCCTCC
EST: TTTTATAATGCAAACTTGGGAATAACCAAGAAGCCTGTACCGGATTTTAG CTTCTATGATCGTTCTGCTCCAATTTATACGCAACCTAGATATTTGCCTCCEST: gi|148950460|gb|EC896030.2|EC896030
genomic: TTTTATAATGCAAACTTGGGAATAACCAAGAAGCCTGTACCGGATTTTAGgtatggtttg ... ctgtatacagCTTCTATGATCGTTCTGCTCCAATTTATACGCAACCTAGATATTTGCCTCC
EST: TTTTATAATGCAAACTTGGGAATAACCAAGAAGCCTGTACCGGATTTTAG CTTCTATGATCGTTCTGCTCCAATTTATACGCAACCTAGATATTTGCCTCCEST: gi|32856251|gb|CD995932.1|CD995932
genomic: TTTTATAATGCAAACTTGGGAATAACCAAGAAGCCTGTACCGGATTTTAGgtatggtttg ... ctgtatacagCTTCTATGATCGTTCTGCTCCAATTTATACGCAACCTAGATATTTGCCTCC
EST: TTTATAATGCAAAACTTGGGAATAACCAAGAAGCCTGTACCGGATTTTAG CTTCTATGATCGTTCTGCTCCAATTTATACGCAACCTAGATATTTGCCTCCEST: gi|32929486|gb|CF034298.1|CF034298
genomic: TTTATAATGC-AAACTTGGGAATAACCAAGAAGCCTGTACCGGATTTTAGgtatggtttg ... ctgtatacagCTTCTATGATCGTTCTGCTCCAATTTATACGCAACCTAGATATTTGCCTCC
EST: ACCGGATTTTAG CTTCTATGATCGTTCTGCTCCAATTTATACGCAACCTAGATATTTGCCTCCEST: gi|211466744|gb|FL411592.1|FL411592
genomic: ACCGGATTTTAGgtatggtttg ... ctgtatacagCTTCTATGATCGTTCTGCTCCAATTTATACGCAACCTAGATATTTGCCTCC
EST: TTTTATAATGCAAACTTGGGAATAACCAAGAAGCCTGTACCGGATTTTAG CTTCTATGATCGTTCTGCTCCAATTTATACGCAACCTAGATATTTGCCTCC
genomic: TTTTATAATGCAAACTTGGGAATAACCAAGAAGCCTGTACCGGATTTTAGgtatggtttg ... ctgtatacagCTTCTATGATCGTTCTGCTCCAATTTATACGCAACCTAGATATTTGCCTCC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AAGCTTACTTATATGATGGTTACTGGGAAGATATTGGTACTATTGAAGCATTTTATAATGCAAACTTGGGAATAACCAAGAAGCCTGTACCGGATTTTAGgtatggtttgtacatgtctacataaagttaagatgttgcaattttctagatctaccacttacctttgatcaaacattctgtatacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC