1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
AACACTTCCATCACTTGCTCCAAAGTTAATGAAGCACGGCCTGCCACCAGATACCCCTGCTGTTGCAGTAGAGCGCGGGACTACACCCCAACAACGAACGgtagcgacccttaggccctcacgaactaaatcgtgtttaaccttgctctgccatcctgaatgtttattgcactgtag
species | Zea mays |
transcript | GRMZM2G105604_T01 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: ATACCCCTGCTGTTGCAGTAGAGCGCGGGACTACACCCCAACAACGAACG GTGTTCGCCTCGTTGAAGGATCTTGTGGATGAAGTCAAGTCAGCCGATCTAEST: gi|71770018|gb|DR967955.1|DR967955
genomic: ATACCCCTGCTGTTGCAGTAGAGCGCGGGACTACACCCCAACAACGAACGgtagcgaccc ... tgcactgtagGTGTTCGCCTCGTTGAAGGATCTTGTGGATGAAGTCAAGTCAGCCGATCTA
EST: ATACCCCTGCTGTTGCAGTAGAGCGCGGGACTACACCCCAACAACGAACG GTGTTCGCCTCGTTGAAGGATCTTGTGGATGAAGTCAAGTCAGCCGATCTAEST: gi|149008993|gb|EE153743.2|EE153743
genomic: ATACCCCTGCTGTTGCAGTAGAGCGCGGGACTACACCCCAACAACGAACGgtagcgaccc ... tgcactgtagGTGTTCGCCTCGTTGAAGGATCTTGTGGATGAAGTCAAGTCAGCCGATCTA
EST: ATACCCCTGCTGTTGCAGTAGAGCGCGGGAGTACACCCCAACAACGAACG GTGTTCGCCTCGTTGAAGGATCTTGTGGATGAAGTCAAGTCAGCCGATCTAEST: gi|149008991|gb|EE153742.2|EE153742
genomic: ATACCCCTGCTGTTGCAGTAGAGCGCGGGACTACACCCCAACAACGAACGgtagcgaccc ... tgcactgtagGTGTTCGCCTCGTTGAAGGATCTTGTGGATGAAGTCAAGTCAGCCGATCTA
EST: ATACCCCTGCTGTTGCAGTAGAGCGCGGGACTACACCCCAACAACGAACG GTGTTCGCCTCGTTGAAGGATCTTGTGGATGAAGTCAAGTCAGCCGATCTAEST: gi|71761266|gb|DR959203.1|DR959203
genomic: ATACCCCTGCTGTTGCAGTAGAGCGCGGGACTACACCCCAACAACGAACGgtagcgaccc ... tgcactgtagGTGTTCGCCTCGTTGAAGGATCTTGTGGATGAAGTCAAGTCAGCCGATCTA
EST: ATACCCCTGCTGTTGCAGTAGAGCGCGGGACTACACCCCAACAACGAACG GTGTTCGCCTCGTTGAAGGATCTTGTGGATGAAGTCAAGTCAGCCGATCTAEST: gi|50328370|gb|CO523496.1|CO523496
genomic: ATACCCCTGCTGTTGCAGTAGAGCGCGGGACTACACCCCAACAACGAACGgtagcgaccc ... tgcactgtagGTGTTCGCCTCGTTGAAGGATCTTGTGGATGAAGTCAAGTCAGCCGATCTA
EST: ATACCCCTGCTGTTGCAGTAGAGCGCGGGACTACACCCCAACAACGAACG GTGTTCGCCTCGTTGAAGGATCTTGTGGATGAAGTCAAGTCAGCCGATCTAEST: gi|71762338|gb|DR960275.1|DR960275
genomic: ATACCCCTGCTGTTGCAGTAGAGCGCGGGACTACACCCCAACAACGAACGgtagcgaccc ... tgcactgtagGTGTTCGCCTCGTTGAAGGATCTTGTGGATGAAGTCAAGTCAGCCGATCTA
EST: ATACCCCTGCTGTTGCAGTAGAGCGCGGGACTACACCCCAACAACGAACG GTGTTCGCCTCGTTGAAGGATCTTGTGGATGAAGTCAAGTCAGCCGATCTAEST: gi|4647587|gb|AI622662.1|AI622662
genomic: ATACCCCTGCTGTTGCAGTAGAGCGCGGGACTACACCCCAACAACGAACGgtagcgaccc ... tgcactgtagGTGTTCGCCTCGTTGAAGGATCTTGTGGATGAAGTCAAGTCAGCCGATCTA
EST: ATACCCCTGCTGTTGCAGTAGAGCGCGGGACTACACCCCAACAACGAACG GTGTTCGCCTCGTTGAAGGATCTTGTGGATGAAGTCAAGTCAGCCGATCTAEST: gi|86467413|gb|DY233783.1|DY233783
genomic: ATACCCCTGCTGTTGCAGTAGAGCGCGGGACTACACCCCAACAACGAACGgtagcgaccc ... tgcactgtagGTGTTCGCCTCGTTGAAGGATCTTGTGGATGAAGTCAAGTCAGCCGATCTA
EST: ATACCCCTGCTGTTGCAGTAGAGCGCGGGACTACACCCCAACAACGAACG GTGTTCGCCTCGTTGAAGGATCTTGTGGATGAAGTCAAGTCAGCCGATCTA
genomic: ATACCCCTGCTGTTGCAGTAGAGCGCGGGACTACACCCCAACAACGAACGgtagcgaccc ... tgcactgtagGTGTTCGCCTCGTTGAAGGATCTTGTGGATGAAGTCAAGTCAGCCGATCTA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AACACTTCCATCACTTGCTCCAAAGTTAATGAAGCACGGCCTGCCACCAGATACCCCTGCTGTTGCAGTAGAGCGCGGGACTACACCCCAACAACGAACGgtagcgacccttaggccctcacgaactaaatcgtgtttaaccttgctctgccatcctgaatgtttattgcactgtag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT