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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAGGCCCAAATACTTAATGAGAAACATGTCCTGGAAAAACGCATTGCATATATGCGCATGgtaaacattttatttatgacgcatcaagtactaccttggagtttgtaaaaaaaaactactaccttagagtcatggcactatgatttaagtgtttatttttttcctttttttgtggggcag

Basic information

species Zea mays
transcript GRMZM2G104377_T02
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G104377_T03 (Zea mays), 5'ss of exon 5
lower sequence: LOC_Os05g01060.2 (Oryza sativa), 5'ss of exon 6
GAGGCCCAAATACTTAATGAGAAACATGTCCTGGAAAAACGCATTGCATATATGCGCATGgtaaacattttat-ttatgacgcatcaagtactaccttggagtttgtaaaaaaaaactactaccttagagtcatggcactatgatttaagtgtttatttttttcctttttttgtggggcag
|| || |||||||| || |||||||||||  ||||||||||||||||||| ||||| |||||||  ||||| | |||| | | ||  |  | |  ||||||||          | |  || |  ||| | |    |||   || ||| ||                               
GAAGCACAAATACTCAACGAGAAACATGTTTTGGAAAAACGCATTGCATACATGCGAATGgtaagtattttgtcttatcaggtattgaaaaatctcttggagt----------acaacaccattttacaat----gcatc-tgttttcag-------------------------------

upper sequence: GRMZM2G104377_T03 (Zea mays), 5'ss of exon 5
lower sequence: Vv07s0130g00420.t01 (Vitis vinifera), 5'ss of exon 6
GAGGCCCAAATACTTAATGAGAAACATGTCCTGGAAAAACGCATTGCATATATGCGCATGgtaaacattttatttatgacgcatcaagtactaccttggagtttgtaaaaaaaaactactaccttagagtcatggcactatgatttaagtgtttatttttttcctttttttgtggggcag
|| || |||||||  ||||||||| |||| ||||||||||||||||| ||||||||  |||||  ||      |  | || | ||   || | ||     |||     |||    || || ||||          |  |   || |     ||| || |  |  |  || |||       
GAAGCACAAATACGCAATGAGAAATATGTTCTGGAAAAACGCATTGCTTATATGCGTTTGgtaggcaggaatatacttacacttc--ttattcccccattgttcc---aaatccccttctcccttc---------ccttccaatctcgacttttcttctccttttggttatgtt------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|22490477|gb|BU050400.1|BU050400
EST:     CGCATTGCATATATGCGCATG                         GCATTTGATCAGCAGCAGCAAGATCTGGTTGATGCTGCATCGAAAGCTTTG
genomic: CGCATTGCATATATGCGCATGgtaaacattt ... tgtggggcagGCATTTGATCAGCAGCAGCAAGATCTGGTTGATGCTGCATCGAAAGCTTTG
EST: gi|19058176|gb|BM736843.1|BM736843
EST:     CGCATTGCATATATGCGCATG                         GCATTTGATCAGCAGCAGCAAGATCTGGTTGATGCTGCATCGAAAGCTTTG
genomic: CGCATTGCATATATGCGCATGgtaaacattt ... tgtggggcagGCATTTGATCAGCAGCAGCAAGATCTGGTTGATGCTGCATCGAAAGCTTTG
EST: gi|32930925|gb|CF035737.1|CF035737
EST:     TACTTAATGAGAAACATGTCCTGGAAAAACGCATTGCATATATGCGCATG                         GCATTTGATCAGCAGCAGCAAGATCTGGTTGATGCTGCATCGAAAGCTTTG
genomic: TACTTAATGAGAAACATGTCCTGGAAAAACGCATTGCATATATGCGCATGgtaaacattt ... tgtggggcagGCATTTGATCAGCAGCAGCAAGATCTGGTTGATGCTGCATCGAAAGCTTTG