1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
AGAAGAGTTTATTATGTCAAAAGATGAGTTTTCAGGTGCTGACATCAAGGCCATTTGTACTGAAGCTGGCTTGCTTGCTTTGAGAGAGCGGCGGATGAAGgtaagacagctcagtacaccaaatacccccttctgttttttcccatgaatctgctactttggattaaccttgttggtacctgaaaccgtcactttttttg...
species | Zea mays |
transcript | GRMZM2G104373_T01 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: CCATTTGTACTGAAGCTGGCTTGCTTGCTTTGAGAGAGCGGCGGATGAAG GTAACGCATGCAGACTTCAAGAAGGCCAAAGAAAAGGTTATGTTCAAGAAGEST: gi|37401158|gb|CF637942.1|CF637942
genomic: CCATTTGTACTGAAGCTGGCTTGCTTGCTTTGAGAGAGCGGCGGATGAAGgtaagacagc ... gttgcgttagGTAACGCATGCAGACTTCAAGAAGGCCAAAGAAAAGGTTATGTTCAAGAAG
EST: CCATTTGTACTGAAGCTGGCTTGCTTGCTTTGAGAGAGCGGCGGATGAAG GTAACGCATGCAGACTTCAAGAAGGCCAAAGAAAAGGTTATGTTCAAGAAGEST: gi|5713774|gb|AI943766.1|AI943766
genomic: CCATTTGTACTGAAGCTGGCTTGCTTGCTTTGAGAGAGCGGCGGATGAAGgtaagacagc ... gttgcgttagGTAACGCATGCAGACTTCAAGAAGGCCAAAGAAAAGGTTATGTTCAAGAAG
EST: CCATTTGTACTGAAGCTGGCTTGCTTGCTTTGAGAGAGCGGCGGATGAAG GTGACGCATGCAGACTTCAAGAAGGCCAAAGAAAAGGTTATGTTCAAGAAGEST: gi|60394503|gb|DN227373.1|DN227373
genomic: CCATTTGTACTGAAGCTGGCTTGCTTGCTTTGAGAGAGCGGCGGATGAAGgtaagacagc ... gttgcgttagGTAACGCATGCAGACTTCAAGAAGGCCAAAGAAAAGGTTATGTTCAAGAAG
EST: CCATTTGTACTGAAGCTGGCTTGCTTGCTTTGAGAGAGCGGCGGATGAAG GTAACGCATGCAGACTTCAAGAAGGCCAAAGAAAAGGTTATGTTCAAGAAGEST: gi|87156235|gb|DY401024.1|DY401024
genomic: CCATTTGTACTGAAGCTGGCTTGCTTGCTTTGAGAGAGCGGCGGATGAAGgtaagacagc ... gttgcgttagGTAACGCATGCAGACTTCAAGAAGGCCAAAGAAAAGGTTATGTTCAAGAAG
EST: CCATTTGTACTGAAGCTGGCTTGCTTGCTTTGAGAGAGCGGCGGATGAAG GTGACGCATGCAGACTTCAAGAAGGCCAAAGAAAAGGTTATGTTCAAGAAGEST: gi|71318153|gb|DR795840.1|DR795840
genomic: CCATTTGTACTGAAGCTGGCTTGCTTGCTTTGAGAGAGCGGCGGATGAAGgtaagacagc ... gttgcgttagGTAACGCATGCAGACTTCAAGAAGGCCAAAGAAAAGGTTATGTTCAAGAAG
EST: CCATTTGTACTGAAGCTGGCTTGCTTGCTTTGAGAGAGCGGCGGATGAAG GTAACGCATGCAGACTTCAAGAAGGCCAAAGAAAAGGTTATGTTCAAGAAGEST: gi|40302995|gb|CK347382.1|CK347382
genomic: CCATTTGTACTGAAGCTGGCTTGCTTGCTTTGAGAGAGCGGCGGATGAAGgtaagacagc ... gttgcgttagGTAACGCATGCAGACTTCAAGAAGGCCAAAGAAAAGGTTATGTTCAAGAAG
EST: CCATTTGTACTGAAGCTGGCTTGCTTGCTTTGAGAGAGCGGCGGATGAAG GTAACGCATGCAGACTTCAAGAAGGCCAAAGAAAAGGTTATGTTCTAGAAGEST: gi|60399673|gb|DN232483.1|DN232483
genomic: CCATTTGTACTGAAGCTGGCTTGCTTGCTTTGAGAGAGCGGCGGATGAAGgtaagacagc ... gttgcgttagGTAACGCATGCAGACTTCAAGAAGGCCAAAGAAAAGGTTATGTTCAAGAAG
EST: CCATTTGTACTGAAGCTGGCTTGCTTGCTTTGAGAGAGCGGCGGATGAAG GTGACGCATGCAGACTTCAAGAAGGCCAAAGAAAAGGTTATGTTCAAGAAGEST: gi|32846493|gb|CD986174.1|CD986174
genomic: CCATTTGTACTGAAGCTGGCTTGCTTGCTTTGAGAGAGCGGCGGATGAAGgtaagacagc ... gttgcgttagGTAACGCATGCAGACTTCAAGAAGGCCAAAGAAAAGGTTATGTTCAAGAAG
EST: ACTGAAGCTGGCTTGCTTGCTTTGAGAGAGCGGCGGATGAAG GTAACGCATGCAGACTTCAAGAAGGCCAAAGAAAAGGTTATGTTCAAGAAGEST: gi|6828042|gb|AW331685.1|AW331685
genomic: ACTGAAGCTGGCTTGCTTGCTTTGAGAGAGCGGCGGATGAAGgtaagacagc ... gttgcgttagGTAACGCATGCAGACTTCAAGAAGGCCAAAGAAAAGGTTATGTTCAAGAAG
EST: CCATTTGTACTGAAGCTGGCTTGCTTGCTTTGAGAGAGCGGCGGATGAAG GTGACGCATGCAGACTTCAAGAAGGCCAAAGAAAAGGTTATGTTCAAGAAGEST: gi|74232019|gb|DT639933.1|DT639933
genomic: CCATTTGTACTGAAGCTGGCTTGCTTGCTTTGAGAGAGCGGCGGATGAAGgtaagacagc ... gttgcgttagGTAACGCATGCAGACTTCAAGAAGGCCAAAGAAAAGGTTATGTTCAAGAAG
EST: CCATTTGTACTGAAGCTGGCTTGCTTGCTTTGAGAGAGCGGCGGATGAAG GTAACGCATGCAGACTTCAAGAAGGCCAAAGAAAAGGTTATGTTCAAGAAGEST: gi|5895801|gb|AW037047.1|AW037047
genomic: CCATTTGTACTGAAGCTGGCTTGCTTGCTTTGAGAGAGCGGCGGATGAAGgtaagacagc ... gttgcgttagGTAACGCATGCAGACTTCAAGAAGGCCAAAGAAAAGGTTATGTTCAAGAAG
EST: CCATTTGTACTGAAGCTGGCTTGCTTGCTTTGAGAGAGCGGCGGATGAAG GTGACGCATGCAGACTTCAAGAAGGCCAAAGAAAAGGTTATGTTCAAGAAGEST: gi|33942345|gb|CF348945.1|CF348945
genomic: CCATTTGTACTGAAGCTGGCTTGCTTGCTTTGAGAGAGCGGCGGATGAAGgtaagacagc ... gttgcgttagGTAACGCATGCAGACTTCAAGAAGGCCAAAGAAAAGGTTATGTTCAAGAAG
EST: CCATTTGTACTGAAGCTGGCTTGCTTGCTTTGAGAGAGCGGCGGATGAAG GTAACGCATGCAGACTTCAAGAAGGCCAAAGAAAAGGTTATGTTCAAGAAGEST: gi|4887302|gb|AI677401.1|AI677401
genomic: CCATTTGTACTGAAGCTGGCTTGCTTGCTTTGAGAGAGCGGCGGATGAAGgtaagacagc ... gttgcgttagGTAACGCATGCAGACTTCAAGAAGGCCAAAGAAAAGGTTATGTTCAAGAAG
EST: CCATTTGTACTGAAGCTGGCTTGCTTGCTTTGAGAGAGCGGCGGATGAAG GTGACGCATGCAGACTTCAAGAAGGCCAAAGAAAAGGTTATGTTCAAGAAGEST: gi|47961685|gb|CN844394.1|CN844394
genomic: CCATTTGTACTGAAGCTGGCTTGCTTGCTTTGAGAGAGCGGCGGATGAAGgtaagacagc ... gttgcgttagGTAACGCATGCAGACTTCAAGAAGGCCAAAGAAAAGGTTATGTTCAAGAAG
EST: CCATTTGTACTGAAGCTGGCTTGCTTGCTTTGAGAGAGCGGCGGATGAAG GTAACGCATGCAGACTTCAAGAAGGCCAAAGAAAAGGTTATGTTCAAGAAGEST: gi|21987487|gb|BQ779015.1|BQ779015
genomic: CCATTTGTACTGAAGCTGGCTTGCTTGCTTTGAGAGAGCGGCGGATGAAGgtaagacagc ... gttgcgttagGTAACGCATGCAGACTTCAAGAAGGCCAAAGAAAAGGTTATGTTCAAGAAG
EST: CCATTTGTACTGAAGCTGGCTTGCTTGCTTTGAGAGAGCGGCGGATGAAG GTGACGCATGCAGACTTCAAGAAGGCCAAAGAAAAGGTTATGTTCAAGAAGEST: gi|60357188|gb|DN224161.1|DN224161
genomic: CCATTTGTACTGAAGCTGGCTTGCTTGCTTTGAGAGAGCGGCGGATGAAGgtaagacagc ... gttgcgttagGTAACGCATGCAGACTTCAAGAAGGCCAAAGAAAAGGTTATGTTCAAGAAG
EST: CCATTTGTACTGAAGCTGGCTTGCTTGCTTTGAGAGAGCGGCGGATGAAG GTAACGCATGCAGACTTCAAGAAGGCCAAAGAAAAGGTTATGTTCAAGAAGEST: gi|20301592|gb|BQ164535.1|BQ164535
genomic: CCATTTGTACTGAAGCTGGCTTGCTTGCTTTGAGAGAGCGGCGGATGAAGgtaagacagc ... gttgcgttagGTAACGCATGCAGACTTCAAGAAGGCCAAAGAAAAGGTTATGTTCAAGAAG
EST: CCATTTGTACTGAAGCTGGCTTGCTTGCTTTGAGAGAGCGGCGGATGAAG GTGACGCATGCAGACTTCAAGAAGGCCAAAGAAAAGGTTATGTTCAAGAAGEST: gi|74232018|gb|DT639932.1|DT639932
genomic: CCATTTGTACTGAAGCTGGCTTGCTTGCTTTGAGAGAGCGGCGGATGAAGgtaagacagc ... gttgcgttagGTAACGCATGCAGACTTCAAGAAGGCCAAAGAAAAGGTTATGTTCAAGAAG
EST: CCATTTGTACTGAAGCTGGCTTGCTTGCTTTGAGAGAGCGGCGGATGAAG GTAACGCATGCAGACTTCAAGAAGGCCAAAGAAAAGGTTATGTTCAAGAAGEST: gi|78103532|gb|DV521960.1|DV521960
genomic: CCATTTGTACTGAAGCTGGCTTGCTTGCTTTGAGAGAGCGGCGGATGAAGgtaagacagc ... gttgcgttagGTAACGCATGCAGACTTCAAGAAGGCCAAAGAAAAGGTTATGTTCAAGAAG
EST: CCATTTGTACTGAAGCTGGCTTGCTTGCTTTGAGAGAGCGGCGGATGAAG GTAACGCATGCAGACTTCAAGAAGGCCAAAGAAAAGGTTATGTTCAAGAAGEST: gi|76917636|gb|DV166930.1|DV166930
genomic: CCATTTGTACTGAAGCTGGCTTGCTTGCTTTGAGAGAGCGGCGGATGAAGgtaagacagc ... gttgcgttagGTAACGCATGCAGACTTCAAGAAGGCCAAAGAAAAGGTTATGTTCAAGAAG
EST: CCATTTGTACTGAAGCTGGCTTGCTTGCTTTGAGAGAGCGGCGGATGAAG GTAACGCATGCAGACTTCAAGAAGGCCAAAGAAAAGGTTATGTTCAAGAAGEST: gi|113795218|gb|DW911359.1|DW911359
genomic: CCATTTGTACTGAAGCTGGCTTGCTTGCTTTGAGAGAGCGGCGGATGAAGgtaagacagc ... gttgcgttagGTAACGCATGCAGACTTCAAGAAGGCCAAAGAAAAGGTTATGTTCAAGAAG
EST: GGCTTGCTTGCTTTGAGAGAGCGGTGGATGAAG GTAACGCATGCAGACTTCAAGAAGGCCAAAGAAAAGGTTATGTTCAAGAAGEST: gi|78023275|gb|DV491662.1|DV491662
genomic: GGCTTGCTTGCTTTGAGAGAGCGGCGGATGAAGgtaagacagc ... gttgcgttagGTAACGCATGCAGACTTCAAGAAGGCCAAAGAAAAGGTTATGTTCAAGAAG
EST: CCATTTGTACTGAAGCTGGCTTGCTTGCTTTGAGAGAGCGGCGGATGAAG GTGACGCATGCAGACTTCAAGAAGGCCAAAGAAAAGGTTATGTTCAAGAAGEST: gi|5650117|gb|AI920477.1|AI920477
genomic: CCATTTGTACTGAAGCTGGCTTGCTTGCTTTGAGAGAGCGGCGGATGAAGgtaagacagc ... gttgcgttagGTAACGCATGCAGACTTCAAGAAGGCCAAAGAAAAGGTTATGTTCAAGAAG
EST: CCATTTGTACTGAAGCTGGCTTGCTTGCTTTGAGAGAGCGGCGGATGAAG GTGACGCATGCAGACTTCAAGAAGGCCAAAGAAAAGGTTATGTTCAAGAAGEST: gi|78544201|gb|DV621699.1|DV621699
genomic: CCATTTGTACTGAAGCTGGCTTGCTTGCTTTGAGAGAGCGGCGGATGAAGgtaagacagc ... gttgcgttagGTAACGCATGCAGACTTCAAGAAGGCCAAAGAAAAGGTTATGTTCAAGAAG
EST: CCATTTGTACTGAAGCTGGCTTGCTTGCTTTGAGAGAGCGGCGGATGAAG GTGACGCATGCAGACTTCAAGAAGGCCAAAGAAAAGGTTATGTTCAAGAAGEST: gi|67015613|gb|CO444362.1|CO444362
genomic: CCATTTGTACTGAAGCTGGCTTGCTTGCTTTGAGAGAGCGGCGGATGAAGgtaagacagc ... gttgcgttagGTAACGCATGCAGACTTCAAGAAGGCCAAAGAAAAGGTTATGTTCAAGAAG
EST: CCATTTGTACTGAAGCTGGCTTGCTTGCTTTGAGAGAGCGGCGGATGAAG GTGACGCATGCAGACTTCAAGAAGGCCAAAGAAAAGGTTATGTTCAAGAAGEST: gi|6022662|gb|AW067474.1|AW067474
genomic: CCATTTGTACTGAAGCTGGCTTGCTTGCTTTGAGAGAGCGGCGGATGAAGgtaagacagc ... gttgcgttagGTAACGCATGCAGACTTCAAGAAGGCCAAAGAAAAGGTTATGTTCAAGAAG
EST: CCATTTGTACTGAAGCTGGCTTGCTTGCTTTGAGAGAGCGGCGGATGAAG GTGACGCATGCAGACTTCAAGAAGGCCAAAGAAAAGGTTATGTTCAAGAAG
genomic: CCATTTGTACTGAAGCTGGCTTGCTTGCTTTGAGAGAGCGGCGGATGAAGgtaagacagc ... gttgcgttagGTAACGCATGCAGACTTCAAGAAGGCCAAAGAAAAGGTTATGTTCAAGAAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGAAGAGTTTATTATGTCAAAAGATGAGTTTTCAGGTGCTGACATCAAGGCCATTTGTACTGAAGCTGGCTTGCTTGCTTTGAGAGAGCGGCGGATGAAGgtaagacagctcagtacaccaaatacccccttctgttttttcccatgaatctgctactttggattaaccttgttggtacctgaaaccgtcactttttttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cccccttc