Sequence
atgc intronic sequence ATGC exonic sequenceAATTCACAAGCATGACAGAAGGGAAGATGGGCTATGAAGACTTTGTTTATTTTATATTATCAGAGGAAGACAAATCATCTGAGCCTAGTCTTGAATACTGgtaggtggtagctgtgttctgaatagttatatgtgttttttttgtagaactgttccttttgtcttaatgtgatcagataatttcaccttacaatttataa...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G104254_T01 (Zea mays), 5'ss of exon 5
lower sequence: Vv14s0036g00750.t01 (Vitis vinifera), 5'ss of exon 6
AATTCACAAGCATGACAGAAGGGAAGATGGGCTATGAAGACTTTGTTTATTTTATATTATCAGAGGAAGACAAATCATCTGAGCCTAGTCTTGAATACTGgtaggtg-gtagctg-tgttctgaatagttatatgtgttttttttgtagaactgttc-cttttgtcttaatgtgatcagataatttcacct-tacaatttataa
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AGTTTACGAGCAAGGTTGAAGGCAAGATGGGATATGAAGATTTTGTCTACTTCATACTGTCGGAAGAGGATAAAACATCTGAGCCTAGTCTTGAGTATTGgtatttctgcagctcctattttgttgagcca---gttttattgtgacaatttcatgcactaataactccac-taatgaatgaatatcttgtctattttttttga
upper sequence: GRMZM2G104254_T01 (Zea mays), 5'ss of exon 5
lower sequence: PP1S68_31V6.1 (Physcomitrella patens), 5'ss of exon 9
AATTCACAAGCATGACAGAAGGGAAGATGGGCTATGAAGACTTTGTTTATTTTATATTATCAGAGGAAGACAAATCATCTGAGCCTAGTCTTGAATACTGgtaggtggtagctgtgttctg--------aatagttatatgtgttttttttgtagaactgttccttttg--tcttaatgtgatcagataatttcacctt---acaatttataa------
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GGTTTAGAAGCGGCGTTGAAGGAAAGATGGGGTATGAGGACTTCGTTTGGTTTATATTATCAGAAGAGGACAAGTCATCGGAGACCAGCCTCGAGTATTGgtgagttcgccctccattttattctctctactgtctgtcagccgatgtcccaaagaaatggccattgtgatttttatttttcttagtctacgctaacattggataagttgtgggaccag
upper sequence: GRMZM2G104254_T01 (Zea mays), 5'ss of exon 5
lower sequence: PP1S191_94V6.1 (Physcomitrella patens), 5'ss of exon 10
AATTCACAAGCATGACAGAAGGGAAGATGGGCTATGAAGACTTTGTTTATTTTATATTATCAGAGGAAGACAAATCATCTGAGCCTAGTCTTGAATACTGgtaggtggtagctgtgttctgaatagttatatgtgttttttttgtagaactgttccttttgtcttaatgtgatcagataatttcaccttacaatttataa----------------------------------------------------------------------
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GGTTCAAAAGCAAAGTTGAAGGAAAAATGGGATATGAGGATTTTGTGTGGTTTATATTATCAGAAGAAGATAAAACATCTGAGACTAGCCTTGACTATTGgtaattttt--ttgtttttttcttattctttttaattttatttattaatttatttattttattatc-tcccatgtagttatttctttttacaagcttgaattcttaaacatgatcattgtgatatatctatatttaatgattatctaacaagtggtgaaaataaaattagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|60352587|gb|DN219560.1|DN219560EST: TTTATATTATCAGAGGAAGACAAATCATCTGAGCCTAGTCTTGAATACTG GTTTAAGTGCATCGATCTTGATGGTAATGGTATTTTAACTTACAATGAAAT
genomic: TTTATATTATCAGAGGAAGACAAATCATCTGAGCCTAGTCTTGAATACTGgtaggtggta ... aaatttgcagGTTTAAGTGCATCGATCTTGATGGTAATGGTATTTTAACTTACAATGAAAT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
AATTCACAAGCATGACAGAAGGGAAGATGGGCTATGAAGACTTTGTTTATTTTATATTATCAGAGGAAGACAAATCATCTGAGCCTAGTCTTGAATACTGgtaggtggtagctgtgttctgaatagttatatgtgttttttttgtagaactgttccttttgtcttaatgtgatcagataatttcaccttacaatttataa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA