1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
CTACCCCGGGGGTCCACTGTTCAATCCACTAGGACTCGCAAAGGATATAGAGAATGCTCATGACGAGAAGCTCAAAGAAATCAAGAACGgtatgttccgctcagcacattttgcgagaaaaataaagcctacaataagtaagttttctaattaatggcgtgatttcttaccgtcacag
species | Zea mays |
transcript | GRMZM2G103101_T02 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: AAAGGATATAGAGAATGCTCATGACGAGAAGCTCAAAGAAATCAAGAACG GGAGGTTGGCAATGGTAGCCATGCTTGGCTTCATGGTGCAAGCATCCGTAAEST: gi|149100655|gb|EE186743.2|EE186743
genomic: AAAGGATATAGAGAATGCTCATGACGAGAAGCTCAAAGAAATCAAGAACGgtatgttccg ... accgtcacagGGAGGTTGGCAATGGTAGCCATGCTTGGCTTCATGGTGCAAGCATCCGTAA
EST: AAAGGATATAGAGAATGCTCATGACGAGAAGCTCAAAGAAATCAAGAACG GGAGGTTGGCAATGGTAGCCATGCTTGGCTTCATGGTGCAAGCATCCGTAAEST: gi|4730640|gb|AI649806.1|AI649806
genomic: AAAGGATATAGAGAATGCTCATGACGAGAAGCTCAAAGAAATCAAGAACGgtatgttccg ... accgtcacagGGAGGTTGGCAATGGTAGCCATGCTTGGCTTCATGGTGCAAGCATCCGTAA
EST: GAGAAGCTCAAAGAAATCAAGAACG GGAGGTTGGCAATGGTAGCCATGCTTGGCTTCATGGTGCAAGCATCCGTAAEST: gi|94472956|gb|EB701914.1|EB701914
genomic: GAGAAGCTCAAAGAAATCAAGAACGgtatgttccg ... accgtcacagGGAGGTTGGCAATGGTAGCCATGCTTGGCTTCATGGTGCAAGCATCCGTAA
EST: ACAGGATATAGAGAATGCTCATGACGAGAAGCTCAAAGAAATCAAGAACG GGAGGGTGGCTATGGTAGCCATGCTTGGCTTCATGGTGCAAGCATCCGTAAEST: gi|32850382|gb|CD990063.1|CD990063
genomic: AAAGGATATAGAGAATGCTCATGACGAGAAGCTCAAAGAAATCAAGAACGgtatgttccg ... accgtcacagGGAGGTTGGCAATGGTAGCCATGCTTGGCTTCATGGTGCAAGCATCCGTAA
EST: AAAGGATATAGAGAATGCTCATGACGAGAAGCTCAAAGAAATCAAGAACG GGAGGTTGGCAATGGTAGCCATGCTTGGCTTCATGGTGCAAGCATCTGTAAEST: gi|13126211|gb|BG316781.1|BG316781
genomic: AAAGGATATAGAGAATGCTCATGACGAGAAGCTCAAAGAAATCAAGAACGgtatgttccg ... accgtcacagGGAGGTTGGCAATGGTAGCCATGCTTGGCTTCATGGTGCAAGCATCCGTAA
EST: AAAGGATATAGAGAATGCTCATGACGAGAAGCTCAAAGAAATCAAGAACG GGAGGTTGGCAATGGTAGCCATGCTTGGCTTCATGGTGCAAGCATCCGTAAEST: gi|13558835|gb|BG550190.1|BG550190
genomic: AAAGGATATAGAGAATGCTCATGACGAGAAGCTCAAAGAAATCAAGAACGgtatgttccg ... accgtcacagGGAGGTTGGCAATGGTAGCCATGCTTGGCTTCATGGTGCAAGCATCCGTAA
EST: AAAGGATATAGAGAATGCTCATGACGAGAAGCTCAAAGAAATCAAGAACG GGAGGTTGGCAATGGTAGCCATGCTTGGCTTCATGGTGCAAGCATCCGTAAEST: gi|149100656|gb|EE186744.2|EE186744
genomic: AAAGGATATAGAGAATGCTCATGACGAGAAGCTCAAAGAAATCAAGAACGgtatgttccg ... accgtcacagGGAGGTTGGCAATGGTAGCCATGCTTGGCTTCATGGTGCAAGCATCCGTAA
EST: AAAGGATATAGAGAATGCTCATGACGAGAAGCTCAAAGAAATCAAGAACG GGAGGTTGGCAATGGTAGCCATGCTTGGCTTCATGGTGCAAGCATCCGTAAEST: gi|16927444|gb|BM080513.1|BM080513
genomic: AAAGGATATAGAGAATGCTCATGACGAGAAGCTCAAAGAAATCAAGAACGgtatgttccg ... accgtcacagGGAGGTTGGCAATGGTAGCCATGCTTGGCTTCATGGTGCAAGCATCCGTAA
EST: AAAGGATATAGAGAATGCTCATGACGAGAAGCTCAAAGAAATCAAGAACG GGAGGTTGGCAATGGTAGCCATGCTTGGCTTCATGGTGCAAGCATCCGTAAEST: gi|148994267|gb|EE034026.2|EE034026
genomic: AAAGGATATAGAGAATGCTCATGACGAGAAGCTCAAAGAAATCAAGAACGgtatgttccg ... accgtcacagGGAGGTTGGCAATGGTAGCCATGCTTGGCTTCATGGTGCAAGCATCCGTAA
EST: AAAGGATATAGAGAATGCTCATGACGAGAAGCTCAAAGAAATCAAGAACG GGAGGTTGGCAATGGTAGCCATGCTTGGCTTCATGGTGCAAGCATCCGTAAEST: gi|148995804|gb|EE035035.2|EE035035
genomic: AAAGGATATAGAGAATGCTCATGACGAGAAGCTCAAAGAAATCAAGAACGgtatgttccg ... accgtcacagGGAGGTTGGCAATGGTAGCCATGCTTGGCTTCATGGTGCAAGCATCCGTAA
EST: AAAGGATATAGAGAATGCTCATGACGAGAAGCTCAAAGAAATCAAGAACG GGAGGTTGGCAATGGTAGCCATGCTTGGCTTCATGGTGCAAGCATCCGTAAEST: gi|161407243|gb|DW042299.1|DW042299
genomic: AAAGGATATAGAGAATGCTCATGACGAGAAGCTCAAAGAAATCAAGAACGgtatgttccg ... accgtcacagGGAGGTTGGCAATGGTAGCCATGCTTGGCTTCATGGTGCAAGCATCCGTAA
EST: CATGACGAGAAGCTCAAAGAAATCAAGAACG GGAGGTTGGCAATGGTAGCCATGCTTGGCTTCATGGTGCAAGCATCCGTAAEST: gi|148967697|gb|EE018962.2|EE018962
genomic: CATGACGAGAAGCTCAAAGAAATCAAGAACGgtatgttccg ... accgtcacagGGAGGTTGGCAATGGTAGCCATGCTTGGCTTCATGGTGCAAGCATCCGTAA
EST: AAAGGATATAGAGAATGCTCATGACGAGAAGCTCANAGAAATCAAGAACG GGAGGTTGGCAATGGTAGCCATGCTTGGCTTCATGGTGCAAGCATCCGTAAEST: gi|148987230|gb|EE031063.2|EE031063
genomic: AAAGGATATAGAGAATGCTCATGACGAGAAGCTCAAAGAAATCAAGAACGgtatgttccg ... accgtcacagGGAGGTTGGCAATGGTAGCCATGCTTGGCTTCATGGTGCAAGCATCCGTAA
EST: AAAGGATATAGAGAATGCTCATGACGAGAAGCTCAAAGAAATCAAGAACG GGAGGTTGGCAATGGTAGCCATGCTTGGCTTCATGGTGCAAGCATCCGTAAEST: gi|16919006|gb|BM073997.1|BM073997
genomic: AAAGGATATAGAGAATGCTCATGACGAGAAGCTCAAAGAAATCAAGAACGgtatgttccg ... accgtcacagGGAGGTTGGCAATGGTAGCCATGCTTGGCTTCATGGTGCAAGCATCCGTAA
EST: AAAGGATATAGAGAATGCTCATGACGAGAAGCTCAAAGAAATCAAGAACG GGAGGTTGGCAATGGTAGCCATGCTTGGCTTCATGGTGCAAGCATCCGTAA
genomic: AAAGGATATAGAGAATGCTCATGACGAGAAGCTCAAAGAAATCAAGAACGgtatgttccg ... accgtcacagGGAGGTTGGCAATGGTAGCCATGCTTGGCTTCATGGTGCAAGCATCCGTAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CTACCCCGGGGGTCCACTGTTCAATCCACTAGGACTCGCAAAGGATATAGAGAATGCTCATGACGAGAAGCTCAAAGAAATCAAGAACGgtatgttccgctcagcacattttgcgagaaaaataaagcctacaataagtaagttttctaattaatggcgtgatttcttaccgtcacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC