1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
ATAATGCGAGATCCTGAAACAGGAAATTCTAGAGGCTTTGGCTTTGTGAGCTATGAGTCCTTTGAATCATCTGACCAAGCAATAGAGgtaatggagtcatcacactgatttcctgtatttcaatttgcagtggttctagctgtctggcatttgtttcatgctgctttctctgctatattttcag
species | Zea mays |
transcript | GRMZM2G102639_T02 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: GACCAAGCAATAGAG GCCATGAACAACCAACATTTGTGCAACCGCCCAATCACTGTCTCTTATGCTEST: gi|71319024|gb|DR796257.1|DR796257
genomic: GACCAAGCAATAGAGgtaatggagt ... atattttcagGCCATGAACAACCAACATTTGTGCAACCGCCCAATCACTGTCTCTTATGCT
EST: TTGGCTTTGTGAGCTATGAGTCCTTTGAATCATCTGACCAAGCAATAGAG GCCATGAACAACCAACATTTGTGCAACCGCCCAATCACTGTCTCTTATGCTEST: gi|211005558|gb|FL032308.1|FL032308
genomic: TTGGCTTTGTGAGCTATGAGTCCTTTGAATCATCTGACCAAGCAATAGAGgtaatggagt ... atattttcagGCCATGAACAACCAACATTTGTGCAACCGCCCAATCACTGTCTCTTATGCT
EST: TTGGCTTTGTGAGCTATGAGTCCTTTGAATCATCTGACCAAGCAATAGAG GCCATGAACAACCAACATTTGTGCAACCGCCCAATCACTGTCTCTTATGCTEST: gi|31355533|gb|CD439890.1|CD439890
genomic: TTGGCTTTGTGAGCTATGAGTCCTTTGAATCATCTGACCAAGCAATAGAGgtaatggagt ... atattttcagGCCATGAACAACCAACATTTGTGCAACCGCCCAATCACTGTCTCTTATGCT
EST: TTGGCTTTGTGAGCTATGAGTCCTTTGTTTCATCTGACCAAGCAATAGAG GCCATGAACAACCAACATTTGTGCAACCGCCCAATCACTGTCTCTTATGCT
genomic: TTGGCTTTGTGAGCTATGAGTCCTTTGAATCATCTGACCAAGCAATAGAGgtaatggagt ... atattttcagGCCATGAACAACCAACATTTGTGCAACCGCCCAATCACTGTCTCTTATGCT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATAATGCGAGATCCTGAAACAGGAAATTCTAGAGGCTTTGGCTTTGTGAGCTATGAGTCCTTTGAATCATCTGACCAAGCAATAGAGgtaatggagtcatcacactgatttcctgtatttcaatttgcagtggttctagctgtctggcatttgtttcatgctgctttctctgctatattttcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA