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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CATGCTTGGTCTTGGAGAGACTGATGAAGAGGTGAAACAAGCCATGATGGATCTACGGGCAATTGGTGTTGACATCCTTACTTTGGGACAGTACTTGCAGgttagctcaatacacacaggacctattgaatctagatatcatgccatcccatcttcctgtaattaacaatttgatatcacag

Basic information

species Zea mays
transcript GRMZM2G101698_T02
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G101698_T02 (Zea mays), 5'ss of exon 5
lower sequence: LOC_Os01g56310.1 (Oryza sativa), 5'ss of exon 5
CATGCTTGGTCTTGGAGAGACTGATGAAGAGGTGAAACAAGCCATGATGGATCTACGGGCAATTGGTGTTGACATCCTTACTTTGGGACAGTACTTGCAGgttagctcaatacacacaggacctattgaatctagatatcatgccatcccatcttcctgtaattaacaatttgatatcacag
|||||||||||||||||||||||| || |||||||||||||||||||| ||  || |||| ||||||||||| ||| | ||  |||| ||||| |||||||||||| || ||| |||   | | |||        ||| |  | ||  |  |  | |   ||  | |   ||||| | ||||
CATGCTTGGTCTTGGAGAGACTGACGAGGAGGTGAAACAAGCCATGATTGACTTAAGGGCCATTGGTGTTGATATCTTGACACTGGGCCAGTATTTGCAGgttagcccagtac-cactttatc-attagtcaagaataactggtcagtctttgatgca--aaccatctgcttgatcttacag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|32859726|gb|CD999407.1|CD999407
EST:     ATCTACGGGCAATTGGTGTTGACATCCTTACTTTGGGACAGTACTTGCAG                         CCATCAGAAAGACATCTAACAGTAAGAGAGTATGTGACTCCCCAAAAGTTC
genomic: ATCTACGGGCAATTGGTGTTGACATCCTTACTTTGGGACAGTACTTGCAGgttagctcaa ... gatatcacagCCATCAGAAAGACATCTAACAGTAAGAGAGTATGTGACTCCCCAAAAGTTC
EST: gi|211317505|gb|FK953025.1|FK953025
EST:     ATCTACGGGCAATTGGTGTTGACATCCTTACTTTGGGACAGTACTTGCAG                         CCATCAGAAAGACATCTAACAGTAAGAGAGTATGTGACTCCCCAAAAAGTT
genomic: ATCTACGGGCAATTGGTGTTGACATCCTTACTTTGGGACAGTACTTGCAGgttagctcaa ... gatatcacagCCATCAGAAAGACATCTAACAGTAAGAGAGTATGTGACTCCCCAAAA-GTT
EST: gi|211319523|gb|FK953030.1|FK953030
EST:     ATCTACGGGCAATTGGTGTTGACATCCTTACTTTGGGACAGTACTTGCAG                         CCATCAGAAAGACATCTAACAGTAAGAGAGTATGTGACTCCC
genomic: ATCTACGGGCAATTGGTGTTGACATCCTTACTTTGGGACAGTACTTGCAGgttagctcaa ... gatatcacagCCATCAGAAAGACATCTAACAGTAAGAGAGTATGTGACTCCC
EST: gi|67023528|gb|CO452277.1|CO452277
EST:     ATCTACGGGCAATTGGTGTTGACATCCTTACTTTTGGACAGTACTTGCAG                         CCATCAGAAAGACATCTAACAGTAAGAGAGTATGTGACTCCNCAAAAGTTC
genomic: ATCTACGGGCAATTGGTGTTGACATCCTTACTTTGGGACAGTACTTGCAGgttagctcaa ... gatatcacagCCATCAGAAAGACATCTAACAGTAAGAGAGTATGTGACTCCCCAAAAGTTC
EST: gi|60341912|gb|DN208885.1|DN208885
EST:     ATCTACGGGCAATTGGTGTTGACATCCTTACTTTGGGACAGTACTTGCAG                         CCATCAGAAAGACATCTAACAGTAAGAGAGTATGTGACTCCCCAAAAGTTC
genomic: ATCTACGGGCAATTGGTGTTGACATCCTTACTTTGGGACAGTACTTGCAGgttagctcaa ... gatatcacagCCATCAGAAAGACATCTAACAGTAAGAGAGTATGTGACTCCCCAAAAGTTC
EST: gi|149001280|gb|EE038563.2|EE038563
EST:     GGGCAATTGGTGTTGACATCCTTACTTTGGGACAGTACTTGCAG                         CCATCAGAAAGACATCTAACAGTAAGAGAGTATGTGACTCCCCAAAAGTTC
genomic: GGGCAATTGGTGTTGACATCCTTACTTTGGGACAGTACTTGCAGgttagctcaa ... gatatcacagCCATCAGAAAGACATCTAACAGTAAGAGAGTATGTGACTCCCCAAAAGTTC
EST: gi|211319532|gb|FK953032.1|FK953032
EST:     ATCTACGGGCAATTGGTGTTGACATCCTTACTTTGGGACAGTACTTGCAG                         CCATCAGAAAGACATCTAACAGTAAGAGAGTATGTGACTCCCCAAAAGTTC
genomic: ATCTACGGGCAATTGGTGTTGACATCCTTACTTTGGGACAGTACTTGCAGgttagctcaa ... gatatcacagCCATCAGAAAGACATCTAACAGTAAGAGAGTATGTGACTCCCCAAAAGTTC
EST: gi|71324728|gb|DR799070.1|DR799070
EST:     ATCTACGGGCAATTGGTGTTGACATCCTTACTTTGGGACAGTACTTGCAG                         CCATCAGAAAGACATCTAACAGTAAGAGAGTATGTGACTCCCCAAAAGTTC
genomic: ATCTACGGGCAATTGGTGTTGACATCCTTACTTTGGGACAGTACTTGCAGgttagctcaa ... gatatcacagCCATCAGAAAGACATCTAACAGTAAGAGAGTATGTGACTCCCCAAAAGTTC
EST: gi|33466996|gb|CF244045.1|CF244045
EST:     ATTTACGGGCAATTGGTGTTGACATCCTTACTTTGGGACAGTACTTGCAG                         CCATCAGAAAGACATCTAACAGTAAGAGAGTATGTGACTCCCCAAAAGTTC
genomic: ATCTACGGGCAATTGGTGTTGACATCCTTACTTTGGGACAGTACTTGCAGgttagctcaa ... gatatcacagCCATCAGAAAGACATCTAACAGTAAGAGAGTATGTGACTCCCCAAAAGTTC