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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTGTCAATGGATAAACTACCATGGACTATGCGCGCACCTAGGAAATCGGTGCCTGAGTTTTATATTGATGAAGTTCTGCCAATACTCATGCGAAGGCGAgtaagtaacctgcaaaacctgtgtaatggcctggaacttatcttgcatattgtttgattacaatattttggctggctgggtgttaagatgagcagtagat...

Basic information

species Zea mays
transcript GRMZM2G101181_T01
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G101181_T01 (Zea mays), 5'ss of exon 5
lower sequence: LOC_Os04g46570.1 (Oryza sativa), 5'ss of exon 5
GTTGTCAATGGATAAACTACCATGGACTATGCGCGCACCTAGGAAATCGGTGCCTGAGTTTTATATTGATGAAGTTCTGCCAATACTCATGCGAAGGCGAgtaagtaacctgcaaaacctgtgtaatggcctggaacttatcttgcatattgtttgattacaatattttggctg-gctgggtgt-taagatgagcagtagat
| |||||||||||||||| |||||||| ||||| || |||||||||||  ||||||| ||||| |||||||||||| |||| || || ||||||||||||||||||||          |    | ||    |     |   ||||   |||||||  |    | |||||        || |  | |  || || || | || 
GATGTCAATGGATAAACTCCCATGGACCATGCGTGCGCCTAGGAAATCCATGCCTGATTTTTACATTGATGAAGTTTTGCCTATCCTTATGCGAAGGCGAgtaagtaatacattgcttcatattgatcaatttatcatctgcttgtg-attgtttcctcgacacattttaatcatattgtgcatcttggaagaacatttga-
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|32805308|gb|CD957544.1|CD957544
EST:     TGCCTGAGTTTTATATTGATGAAGTTCTGCCAATACTCATGCGAAGGCGA                         GCTTTGCAATTA
genomic: TGCCTGAGTTTTATATTGATGAAGTTCTGCCAATACTCATGCGAAGGCGAgtaagtaacc ... atctttgcagGCTTTGCAATTA