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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CGAAATATTGTCATGCTGCTTGGGTACTGCTGCAAAGAAAGCTATAACATCTTGGTGTATGAGTATATATGCAACAATTCTCTCGAGTGGCATTTATTTGgtatgtggttgatatgcttaaaacttcaaaagaataataatgcgatgatgacaggcttactttgctcttgttacttggtggaaacag

Basic information

species Zea mays
transcript GRMZM2G100454_T03
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G100454_T03 (Zea mays), 5'ss of exon 5
lower sequence: LOC_Os01g65940.1 (Oryza sativa), 5'ss of exon 5
CGAAATATTGTCATGCTGCTTGGGTACTGCTGCAAAGAAAGCTATAACATCTTGGTGTATGAGTATATATGCAACAATTCTCTCGAGTGGCATTTATTTGgtatg----tggttgatatgcttaaaact-tcaaaagaataataatgcgatgatgacaggcttactttgctcttgttacttggtggaaacag
|||||||||||||||||||||||||| || |||||||||||||| ||||| |||||||||||||| ||||||||||| || || ||||||||||||||||||| |    | |||||| |||  |||    |  | |   | |  |||  | | || |    |||||||||||  || ||||| || ||| ||
CGAAATATTGTCATGCTGCTTGGGTATTGTTGCAAAGAAAGCTACAACATTTTGGTGTATGAGTACATATGCAACAAATCCCTTGAGTGGCATTTATTTGgtaagagcttagttgatgtgcagaaagtaatttatattgtgaagatg-aagggtggctaatttactttgctc--gtcacttgatg-aaatag

upper sequence: GRMZM2G100454_T03 (Zea mays), 5'ss of exon 5
lower sequence: GLYMA13G09340.1 (Glycine max), 5'ss of exon 1
CGAAATATTGTCATGCTGCTTGGGTACTGCTGCAAAGAAAGCTATAACATCTTGGTGTATGAGTATATATGCAACAATTCTCTCGAGTGGCATTTATTTGgtatgtggttgatatgcttaaaacttcaaaagaataataatgcgatgatgacaggcttactttg-ctcttgttacttggtggaaacag--------------
   ||||| || |||||  | || ||||| | |||||| ||    ||||| ||||| ||||||||||| |||||||| ||||| || ||||||||| |||||| ||  |  |  || ||    |||   |    |  |  ||     ||   |   | | |||| | ||  ||  |      | |                 
AAGAATATAGTAATGCTTTTGGGTTACTGTTTCAAAGATAGGCTAAACATTTTGGTATATGAGTATATTTGCAACAAGTCTCTTGATTGGCATTTAGTTGgtaagtactaaagttgtttttttctttttact--tgtttttgttgaaatataaatttgattttgaccctcatttatccaaacagaagatcaattcttagaaa

upper sequence: GRMZM2G100454_T03 (Zea mays), 5'ss of exon 5
lower sequence: Vv18s0001g14990.t01 (Vitis vinifera), 5'ss of exon 6
CGAAATATTGTCATGCTGCTTGGGTACTGCTGCAAAGAAAGCTATAACATCTTGGTGTATGAGTATATATGCAACAATTCTCTCGAGTGGCATTTATTTGgtatgtggttg-atatgcttaaaacttcaaaagaataataatgcgatgatgac---aggcttactttgctcttgttacttggtggaaacag---------------------------------------------------
   || ||||| |||||  | || || || ||||| || | || ||| |||||||||||||||||||| |||||||| ||||| || ||||| |||||||||| |    || | |  ||  |   ||||||   ||   |   | ||  |       | ||| |     |    | ||||| |    |                                                      
AAGAACATTGTGATGCTCTTGGGTTATTGTTGCAAGGAGAACTTTAATATCTTGGTGTATGAGTATATCTGCAACAAGTCTCTTGAATGGCACTTATTTGgtaagcaactgtacagactacaggtttcaaatccattccatctcaatttttttctaggtctttcaccaattcaatcacttgttctctatcccaaaattaatcgttaattgccttcttttaatttttgcaatgatttttatag