1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
GGTTCCAGCGGCATGTGGAGCCACAGGTCACGACTGATGAGTATGAGCGGGGATCATATGTATACTTTGATTTCCATGTCACTGAGGATGGCTCAGGATGgtatgtgggccttaactttagtcgtgcttattttagggcattctgagtttactcttttttttttgccatgttcttttgtgctctaacctgttcctaacactgcttgcag
species | Zea mays |
transcript | GRMZM2G100246_T01 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: GGATCATATGTATACTTTGATTTCCATGTCACTGAGGATGGCTCAGGATG GTGCCAAAGAATCAAGAATGACTTCACATTTGAGTACAACTACCTGGAGGAEST: gi|8665864|gb|BE186680.1|BE186680
genomic: GGATCATATGTATACTTTGATTTCCATGTCACTGAGGATGGCTCAGGATGgtatgtgggc ... ctgcttgcagGTGCCAAAGAATCAAGAATGACTTCACATTTGAGTACAACTACCTGGAGGA
EST: GGATCATATGTATACTTTGATTTCCATGTCACTGAGGATGGCTCAGGATG GTGCCAAAGAATCAAGAATGACTTCACATTTGAGTACAACTACCTGGAGGAEST: gi|60357172|gb|DN224145.1|DN224145
genomic: GGATCATATGTATACTTTGATTTCCATGTCACTGAGGATGGCTCAGGATGgtatgtgggc ... ctgcttgcagGTGCCAAAGAATCAAGAATGACTTCACATTTGAGTACAACTACCTGGAGGA
EST: GGATCATATGTATACTTTGATTTCCATGTCACTGAGGATGGCTCAGGATG GTGCCAAAGAATCAAGAATGACTTCACATTTGAGTACAACTACCTGGAGGAEST: gi|74238444|gb|DT646358.1|DT646358
genomic: GGATCATATGTATACTTTGATTTCCATGTCACTGAGGATGGCTCAGGATGgtatgtgggc ... ctgcttgcagGTGCCAAAGAATCAAGAATGACTTCACATTTGAGTACAACTACCTGGAGGA
EST: GGATCATATGTATACTTTGATTTCCATGTCACTGAGGATGGCTCAGGATG GTGCCAAAGAATCAAGAATGACTTCACATTTGAGTACAACTACCTGGAGGAEST: gi|74238445|gb|DT646359.1|DT646359
genomic: GGATCATATGTATACTTTGATTTCCATGTCACTGAGGATGGCTCAGGATGgtatgtgggc ... ctgcttgcagGTGCCAAAGAATCAAGAATGACTTCACATTTGAGTACAACTACCTGGAGGA
EST: GGATCATATGTATACTTTGATTTCCATGTCACTGAGGATGGCTCAGGATG GTGCCAAAGAATCAAGAATGACTTCACATTTGAGTACAACTACCTGGAGGAEST: gi|60342982|gb|DN209955.1|DN209955
genomic: GGATCATATGTATACTTTGATTTCCATGTCACTGAGGATGGCTCAGGATGgtatgtgggc ... ctgcttgcagGTGCCAAAGAATCAAGAATGACTTCACATTTGAGTACAACTACCTGGAGGA
EST: GGATCATATGTATACTTTGATTTCCATGTCACTGAGGATGGCTCAGGATG GTGCCAAAGAATCAAGAATGACTTCACATTTGAGTACAACTACCTGGAGGAEST: gi|30087988|gb|CB886193.1|CB886193
genomic: GGATCATATGTATACTTTGATTTCCATGTCACTGAGGATGGCTCAGGATGgtatgtgggc ... ctgcttgcagGTGCCAAAGAATCAAGAATGACTTCACATTTGAGTACAACTACCTGGAGGA
EST: GGATCATATGTATACTTTGATTTCCATGTCACTGAGGATGGCTCAGGATG GTGCCAAAGAATCAAGAATGACTTCACATTTGAGTACAACTACCTGGAGGA
genomic: GGATCATATGTATACTTTGATTTCCATGTCACTGAGGATGGCTCAGGATGgtatgtgggc ... ctgcttgcagGTGCCAAAGAATCAAGAATGACTTCACATTTGAGTACAACTACCTGGAGGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGTTCCAGCGGCATGTGGAGCCACAGGTCACGACTGATGAGTATGAGCGGGGATCATATGTATACTTTGATTTCCATGTCACTGAGGATGGCTCAGGATGgtatgtgggccttaactttagtcgtgcttattttagggcattctgagtttactcttttttttttgccatgttcttttgtgctctaacctgttcctaacactgcttgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG