1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
AGATGTCCATGTTGATGGCTTGTGAAAGCAGGTTCTTGGCCTAAGACTGACTCAGATGACCCTTCAAAGAGGATGGAATAACAAATCTAAGCTTCTAATTgtgagttcttactgctaatagtatccagttctgatgcactgaactgaatcctatattatttttctttcccgcaatttttttacatgtatctactattgtttctcttctaaaaatatacttgggattttgctctaag
species | Zea mays |
transcript | GRMZM2G099547_T03 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: CCTTCAAAGAGGATGGAATAACGAAATCTAAGCTTACTAATT GTTGAGGATTTGTCTGCACGGCAAGTGTATGAGAAGCTCCTAGAAGCTGTEST: gi|60401150|gb|DN233957.1|DN233957
genomic: CCTTCAAAGAGGATGGAATAAC-AAATCTAAGCTT-CTAATTgtgagttctt ... ttgctctaagGTTGAGGATTTGTCTGCACGGCAAGTGTATGAGAAGCTCCTAGAAGCTGT
EST: CTCAGATGACCCTTCAAAGAGGATGGAATAACAAATCTAAGCTTCTAATT GTTGAGGATTTGTCTGCACGGCAAGTGTATGAGAAGCTCCTAGAAGCTGTA
genomic: CTCAGATGACCCTTCAAAGAGGATGGAATAACAAATCTAAGCTTCTAATTgtgagttctt ... ttgctctaagGTTGAGGATTTGTCTGCACGGCAAGTGTATGAGAAGCTCCTAGAAGCTGTA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGATGTCCATGTTGATGGCTTGTGAAAGCAGGTTCTTGGCCTAAGACTGACTCAGATGACCCTTCAAAGAGGATGGAATAACAAATCTAAGCTTCTAATTgtgagttcttactgctaatagtatccagttctgatgcactgaactgaatcctatattatttttctttcccgcaatttttttacatgtatctactattgtttctcttctaaaaatatacttgggattttgctctaag
- - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA