1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
GAATTCAGTGACCCCCGTGATGCTGATGATGCGCAGTACAACCTAGATGGCAGGGAAGTCGATGGAAGCCGTATTATTGTTGAATTTGCTAAAGGAgtaagttagtgttctatcaaaatctctgtttatcaagctaatggtgaaacgagcatatattgaacttacgattttccaaaaaacacttatttgcag
species | Zea mays |
transcript | GRMZM2G099186_T03 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: ATGGCAGGGAAGTCGATGGAAGCCGTATTATTGTTGAATTTGCTAAAGGA GTTCCTCGTGGTTCTGGTGGTTCACGTGAGTACATGGGAAGAGGACCTCCAEST: gi|19057891|gb|BM736558.1|BM736558
genomic: ATGGCAGGGAAGTCGATGGAAGCCGTATTATTGTTGAATTTGCTAAAGGAgtaagttagt ... ttatttgcagGTTCCTCGTGGTTCTGGTGGTTCACGTGAGTACATGGGAAGAGGACCTCCA
EST: ATGGCAGGGAAGTCGATGGAAGCCGTATTATTGGTGAATTTGCTAAAGGA GTTCCTCGTGGTTCTGGTGGTTCACGTGAGTACATGGGAAGAGGACCTCCAEST: gi|71309062|gb|DR790796.1|DR790796
genomic: ATGGCAGGGAAGTCGATGGAAGCCGTATTATTGTTGAATTTGCTAAAGGAgtaagttagt ... ttatttgcagGTTCCTCGTGGTTCTGGTGGTTCACGTGAGTACATGGGAAGAGGACCTCCA
EST: ATGGCAGGGAAGTCGATGGAAGCCGTATTATTGTTGAATTTGCTAAAGGA GTTCCTCGTGGTTCTGGTGGTTCACGTGAGTACATGGGAAGAGGACCTCCAEST: gi|31351638|gb|CD435995.1|CD435995
genomic: ATGGCAGGGAAGTCGATGGAAGCCGTATTATTGTTGAATTTGCTAAAGGAgtaagttagt ... ttatttgcagGTTCCTCGTGGTTCTGGTGGTTCACGTGAGTACATGGGAAGAGGACCTCCA
EST: ATGGCAGGGAAGTCGATGGAAGCCGTATTATTGTTGAATTTGCTAAAGGA GTTCCTCGTGGTTCTGGTGGTTCACGTGAGTACATGGGAAGAGGACCTCCAEST: gi|32835126|gb|CD974804.1|CD974804
genomic: ATGGCAGGGAAGTCGATGGAAGCCGTATTATTGTTGAATTTGCTAAAGGAgtaagttagt ... ttatttgcagGTTCCTCGTGGTTCTGGTGGTTCACGTGAGTACATGGGAAGAGGACCTCCA
EST: ATGGCAGGGAAGTCGATGGAAGCCGTATTATTGTTGAATTTGCTAAAGGA GTTCCTCGTGGTTCTGGTGGTTCACGTGAGT
genomic: ATGGCAGGGAAGTCGATGGAAGCCGTATTATTGTTGAATTTGCTAAAGGAgtaagttagt ... ttatttgcagGTTCCTCGTGGTTCTGGTGGTTCACGTGAGT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GAATTCAGTGACCCCCGTGATGCTGATGATGCGCAGTACAACCTAGATGGCAGGGAAGTCGATGGAAGCCGTATTATTGTTGAATTTGCTAAAGGAgtaagttagtgttctatcaaaatctctgtttatcaagctaatggtgaaacgagcatatattgaacttacgattttccaaaaaacacttatttgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG